{"id":"W2000860171","doi":"10.1038/nmeth.2212","title":"A travel guide to Cytoscape plugins","year":2012,"lang":"en","type":"article","venue":"Nature Methods","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1560,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Cancer Institute","keywords":"Plug-in; Computer science; Visualization; Set (abstract data type); Data science; Software; World Wide Web; Data mining; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002127041,0.002262359,0.001424581,0.004805092,0.001661315,0.003466201,0.004219004,0.002423384,0.2044725],"category_scores_gemma":[0.0131053,0.002821632,0.001947408,0.004685132,0.0005938425,0.003177887,0.003147432,0.005995389,0.1999875],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001277581,"about_ca_system_score_gemma":0.002728019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006066569,"about_ca_topic_score_gemma":0.01418944,"domain_scores_codex":[0.9987979,0.0002534768,0.000128274,0.0001678254,0.000512477,0.0001400438],"domain_scores_gemma":[0.9944988,0.002662796,0.0001772723,0.0008122886,0.001157164,0.0006917621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000100106,0.00008087337,0.0002219393,0.0006218824,0.00006734281,0.0001175184,0.00007526145,0.001138008,0.003198154,0.005115651,0.8909845,0.09827876],"study_design_scores_gemma":[0.0001001386,0.00003852773,0.0005210439,0.0002602435,0.00004797319,0.0002760285,0.00002795635,0.003404956,0.004272829,0.02207552,0.9688784,0.00009641534],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"review","genre_scores_codex":[0.001582971,0.006206962,0.4218519,0.00316841,0.003441989,0.0009797593,0.133557,0.3591056,0.07010534],"genre_scores_gemma":[0.01089552,0.007165752,0.525467,0.006814544,0.001193697,0.004345668,0.1560972,0.1204356,0.1675851],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.2044725,"threshold_uncertainty_score":0.6840286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0102531177485946,"score_gpt":0.3616017069744648,"score_spread":0.3513485892258702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}