{"id":"W2001223373","doi":"10.1002/prot.21564","title":"Operons and the effect of genome redundancy in deciphering functional relationships using phylogenetic profiles","year":2007,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Operon; Genome; Gene; Phylogenetic tree; Biology; Computational biology; Context (archaeology); Genetics; Redundancy (engineering); Evolutionary biology; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009294259,0.001123029,0.0009354977,0.004278643,0.0006384307,0.001401536,0.0009361936,0.001487269,0.0005158264],"category_scores_gemma":[0.03921232,0.0004374831,0.001237994,0.002895017,0.001217592,0.002079352,0.001792016,0.001426784,0.0003094669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005364758,"about_ca_system_score_gemma":0.0005879803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002430988,"about_ca_topic_score_gemma":0.00151298,"domain_scores_codex":[0.9923062,0.00350109,0.0004818166,0.001256308,0.00203863,0.0004159699],"domain_scores_gemma":[0.9539679,0.0382894,0.003151533,0.002305529,0.001750503,0.0005350822],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002426919,0.0003514526,0.333861,0.001227343,0.001104005,0.001419889,0.00142191,0.3405443,0.1030333,0.008724653,0.001751932,0.2041335],"study_design_scores_gemma":[0.00004913655,0.0008485798,0.1410887,0.0002261944,0.0002882249,0.001383823,0.0003329594,0.7801677,0.05594384,0.0166734,0.002787731,0.000209738],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8357071,0.003474007,0.1573114,0.000265842,0.00003949189,0.0000516163,0.0009590687,0.0008332586,0.001358157],"genre_scores_gemma":[0.9720747,0.0004015431,0.0259377,0.00005219396,0.00002814872,0.00003635982,0.001261428,0.00008360711,0.0001242938],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009294259,"threshold_uncertainty_score":0.04915333,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01127709420537746,"score_gpt":0.2150990678782827,"score_spread":0.2038219736729052,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}