{"id":"W2001695232","doi":"10.1016/j.funbio.2013.04.001","title":"Optimization of a real-time PCR assay for the detection of the quarantine pathogen Melampsora medusae f. sp. deltoidae","year":2013,"lang":"en","type":"article","venue":"Fungal Biology","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"Natural Resources Canada","funders":"","keywords":"Biology; Phytosanitary certification; Mycosphaerella; Internal transcribed spacer; Quarantine; Botany; Pathogen; Basidiomycota; PEST analysis; Polymerase chain reaction; Urediniospore; Ribosomal RNA; Horticulture; Microbiology; Ecology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003928984,0.00007986237,0.0001264341,0.000008994642,0.0001325178,0.000008482222,0.0002165592,0.0001000211,0.0002690032],"category_scores_gemma":[0.0001262269,0.00002216007,0.00009180262,0.0002002047,0.0001172687,0.00003688594,0.00006648738,0.00004728816,0.000007731467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007595602,"about_ca_system_score_gemma":0.000004695711,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000800239,"about_ca_topic_score_gemma":0.0002073974,"domain_scores_codex":[0.999261,0.0001467307,0.0002160161,0.0001725545,0.00006837049,0.0001353568],"domain_scores_gemma":[0.9993342,0.0002075194,0.0001878072,0.00009368541,0.0001595563,0.00001725185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002504291,0.00003159079,0.0004304114,0.000004696101,0.00002315443,1.397845e-8,0.00001682722,0.0002850696,0.9303215,0.0005364387,0.0006741361,0.06765115],"study_design_scores_gemma":[0.0009664512,0.002547254,0.2310944,0.00003544731,0.000211267,0.00001212672,0.0008173601,0.02066118,0.5493532,0.001852911,0.1918786,0.0005697677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828582,0.0003424009,0.003665794,0.008156662,0.002797722,0.001375925,0.00009658597,0.00006417389,0.0006424661],"genre_scores_gemma":[0.9984708,0.0001131237,0.0003383234,0.00007048303,0.0005023383,0.00007130713,0.0000356571,9.747823e-7,0.0003970081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3809682,"threshold_uncertainty_score":0.2945397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01266350775083891,"score_gpt":0.2037872556711277,"score_spread":0.1911237479202888,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}