{"id":"W2001895598","doi":"10.1371/journal.ppat.1000680","title":"Investigation of the Genes Involved in Antigenic Switching at the vlsE Locus in Borrelia burgdorferi: An Essential Role for the RuvAB Branch Migrase","year":2009,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Biology; Borrelia burgdorferi; Genetics; Locus (genetics); Gene; Plasmid; Antigenic variation; Gene conversion; Recombination; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000103078,0.0003717802,0.000234742,0.0002578109,0.0001003413,0.0002104496,0.0001693707,0.0003076061,0.0004161918],"category_scores_gemma":[0.0001096253,0.0001577411,0.0002756384,0.0001357223,0.0002540118,0.0001316086,0.0001524481,0.0004224547,0.000198072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002222491,"about_ca_system_score_gemma":0.0001561845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003619443,"about_ca_topic_score_gemma":0.0004008198,"domain_scores_codex":[0.999905,0.00001816882,0.000009010806,0.00002147435,0.00002222469,0.00002415765],"domain_scores_gemma":[0.9998088,0.00006034764,0.00006588692,0.00001733713,0.000009712548,0.00003793207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005466464,0.00001658221,0.0004722737,0.00001412309,0.000002071897,0.00004526749,0.00001107753,0.00001855021,0.9987968,0.00001975564,0.000003109659,0.0005456618],"study_design_scores_gemma":[0.00002185563,0.000478499,0.03173745,0.00001035935,0.00003524184,0.0007659827,0.00005778859,0.0005378814,0.9649577,0.00005200534,0.001338942,0.000006349592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983968,0.0007116286,0.0005827558,0.00003005084,0.0000028554,0.000005544884,0.000122656,0.0000107509,0.0001369013],"genre_scores_gemma":[0.996426,0.0005337681,0.001624933,0.00002648254,0.000005097277,0.00001606496,0.0005976321,0.00001404772,0.0007559844],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004161918,"threshold_uncertainty_score":0.001612544,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01399940965380975,"score_gpt":0.2297624151241198,"score_spread":0.2157630054703101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}