{"id":"W2002033363","doi":"10.1371/journal.ppat.1000100","title":"Genome-Wide Screen of Three Herpesviruses for Protein Subcellular Localization and Alteration of PML Nuclear Bodies","year":2008,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Cancer Institute; Genome Canada; Ontario Genomics; Canadian Institutes of Health Research; Canada Research Chairs; Ontario Genomics Institute","keywords":"Cajal body; Biology; Subcellular localization; Lytic cycle; Promyelocytic leukemia protein; Herpes simplex virus; Nucleolus; Cell biology; Nuclear localization sequence; Protein subcellular localization prediction; Virology; Genome; Nuclear pore; Nuclear protein; Virus; Cytoplasm; Gene; RNA; Genetics; Transcription factor; RNA splicing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001600543,0.0001285801,0.0003849688,0.000158371,0.0001285734,0.000008462271,0.00006469585,0.00009414806,0.00008851029],"category_scores_gemma":[0.0002049668,0.0001148753,0.00008896305,0.0001268002,0.000191826,0.00008601724,0.00004555479,0.00008212564,0.000007980467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000304918,"about_ca_system_score_gemma":0.00009422433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009620425,"about_ca_topic_score_gemma":0.00008104572,"domain_scores_codex":[0.9988385,0.00003287033,0.0003598543,0.0002256309,0.0003308012,0.0002122957],"domain_scores_gemma":[0.9991652,0.00004931764,0.0001216781,0.0002425308,0.0003219214,0.00009931536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007295329,0.0003177612,0.06362806,0.000811157,0.0001553941,0.00002203923,0.001697205,0.00003114116,0.9305273,0.0003942664,0.00009157784,0.001594523],"study_design_scores_gemma":[0.005932543,0.003540205,0.1686451,0.0007481634,0.0004847831,0.00005118965,0.0005426453,0.02424749,0.7632749,0.001232257,0.03063769,0.0006630125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993364,0.0007809301,0.003974402,0.0001246449,0.000009321451,0.0013217,0.0001358582,0.00002771621,0.0002614147],"genre_scores_gemma":[0.9965186,0.0003048329,0.002731233,0.00006542947,0.00007683823,0.00004441736,0.00006465139,0.00003991873,0.000154104],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1672524,"threshold_uncertainty_score":0.468448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05611458069139576,"score_gpt":0.2717343185643398,"score_spread":0.215619737872944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}