{"id":"W2002170904","doi":"10.1371/journal.pone.0023014","title":"Genetic Organisation, Mobility and Predicted Functions of Genes on Integrated, Mobile Genetic Elements in Sequenced Strains of Clostridium difficile","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Leids Universitair Medisch Centrum; Wellcome Trust; McGill University","keywords":"Mobile genetic elements; Transposable element; Genome; Biology; Clostridium difficile; Genetics; Gene; Strain (injury); In silico","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002065213,0.0005533538,0.0003155118,0.0009251481,0.0002266687,0.0004128367,0.0002709399,0.0004824886,0.0008604201],"category_scores_gemma":[0.001052102,0.0001703162,0.0005494983,0.001299431,0.0002783195,0.0001633897,0.0002866348,0.0003958289,0.0004954183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002995089,"about_ca_system_score_gemma":0.0003834811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002837061,"about_ca_topic_score_gemma":0.002756791,"domain_scores_codex":[0.9997613,0.00002120417,0.00003093927,0.00007043703,0.00007618529,0.00003998298],"domain_scores_gemma":[0.9990127,0.0002682148,0.0002684513,0.00007875919,0.0002023283,0.0001695408],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006568508,0.0001268604,0.0254033,0.0003394878,0.00006781854,0.0005237245,0.0005172918,0.0004609354,0.966055,0.00007940989,0.0000650855,0.005704229],"study_design_scores_gemma":[0.0001051493,0.001325548,0.7016306,0.0001968355,0.0005001761,0.009414002,0.001492183,0.003270507,0.2749137,0.0002301714,0.006835932,0.00008520242],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955639,0.0003167385,0.001540211,0.00001709529,0.000008351944,0.00003510289,0.002063283,0.0000247633,0.0004306973],"genre_scores_gemma":[0.9836537,0.0002244911,0.005556437,0.00003685388,0.000007914389,0.00004963997,0.009647467,0.00003526822,0.0007881677],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002837061,"threshold_uncertainty_score":0.005641103,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06252466187963639,"score_gpt":0.2651631792006753,"score_spread":0.2026385173210389,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}