{"id":"W2002170904","doi":"10.1371/journal.pone.0023014","title":"Genetic Organisation, Mobility and Predicted Functions of Genes on Integrated, Mobile Genetic Elements in Sequenced Strains of Clostridium difficile","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Leids Universitair Medisch Centrum; Wellcome Trust; McGill University","keywords":"Mobile genetic elements; Transposable element; Genome; Biology; Clostridium difficile; Genetics; Gene; Strain (injury); In silico","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001976824,0.0002354951,0.000567197,0.0003589131,0.00004888313,0.000007099939,0.0001472634,0.0001622568,0.001104813],"category_scores_gemma":[0.0002252979,0.0002165139,0.00006998365,0.0006026709,0.0002858512,0.00004166912,0.00007798047,0.0003034971,0.000014196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001643382,"about_ca_system_score_gemma":0.0003482193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005478759,"about_ca_topic_score_gemma":0.0001081952,"domain_scores_codex":[0.997574,0.0001027456,0.000856798,0.0004510245,0.000655306,0.0003600866],"domain_scores_gemma":[0.9985724,0.00008028712,0.0001906343,0.0005504743,0.0004201379,0.0001860596],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004843051,0.007584769,0.1627373,0.0005044098,0.0002540079,0.00001734962,0.0007304849,0.00002368062,0.8252535,0.00001121141,0.00002727006,0.002371714],"study_design_scores_gemma":[0.001743429,0.002596183,0.205828,0.0002836595,0.0002206721,0.00000626057,0.0008459471,0.0007146273,0.7875748,0.00003396294,0.000009233752,0.0001431839],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971204,0.0003755742,0.00003092669,0.00003208883,0.00002798464,0.00145555,0.0003464065,0.00004203122,0.0005690012],"genre_scores_gemma":[0.997285,0.0006249867,0.001615995,0.00001510461,0.00005077548,0.000146987,0.00008150603,0.00003449441,0.0001451372],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04309078,"threshold_uncertainty_score":0.9998083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06252466187963639,"score_gpt":0.2651631792006753,"score_spread":0.2026385173210389,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}