{"id":"W2002171861","doi":"10.1111/j.1467-7652.2009.00416.x","title":"Strategies to mitigate transgene–promoter interactions","year":2009,"lang":"en","type":"article","venue":"Plant Biotechnology Journal","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Iogen Corporation; University of Ottawa","funders":"","keywords":"Biology; Promoter; Enhancer; Transgene; Cauliflower mosaic virus; Selectable marker; DNA; Genetics; Gene; Computational biology; Cell biology; Gene expression; Genetically modified crops","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007472758,0.0001271488,0.0001092452,0.0001092683,0.0001683848,0.00005933255,0.0001865277,0.0002509763,0.00002238051],"category_scores_gemma":[0.00001283895,0.0000999927,0.00006129289,0.00007808108,0.00003538327,0.000009374371,0.00001480317,0.000261181,0.00003060913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000126369,"about_ca_system_score_gemma":0.00006913856,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004761339,"about_ca_topic_score_gemma":0.0003101132,"domain_scores_codex":[0.9993258,0.00002413354,0.0001749241,0.0001888287,0.0000673608,0.0002189489],"domain_scores_gemma":[0.9996812,0.000002460537,0.00005394201,0.0001373405,0.0000382971,0.00008676689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004378614,0.00003479719,0.00001549722,0.000001142813,0.00003641171,0.00003916336,0.00004821751,0.00009261922,0.9710016,0.0004386743,0.01309621,0.01515194],"study_design_scores_gemma":[0.0001602058,0.0003473829,0.0002025253,0.00001343809,0.0000135332,0.003008009,0.00009512856,0.00002113993,0.6331441,0.0001514551,0.3627199,0.0001232294],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9256305,0.002059501,0.03488516,0.03397703,0.0006342777,0.0001993109,0.00008017393,0.0000770694,0.002457034],"genre_scores_gemma":[0.9953426,0.0005301867,0.001726822,0.0007046253,0.0004423308,0.000003395441,0.0001219487,0.000007828837,0.001120332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3496237,"threshold_uncertainty_score":0.4077584,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0107298655580449,"score_gpt":0.2494471335408106,"score_spread":0.2387172679827657,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}