{"id":"W2002788678","doi":"10.1371/journal.pone.0017824","title":"Salmonella Phage ST64B Encodes a Member of the SseK/NleB Effector Family","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Health and Medical Research Council; Medical Research Council; Canadian Institutes of Health Research; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Effector; Salmonella enterica; Biology; Salmonella; Virulence; Lysogen; Type three secretion system; Microbiology; Pathogenicity island; Bacteriophage; Typhoid fever; Gene; Genome; Serotype; Genetics; Bacteria; Escherichia coli; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001138523,0.0004186478,0.0002437852,0.0004685775,0.000160452,0.0002344503,0.00009596596,0.0002148834,0.001383737],"category_scores_gemma":[0.0001519658,0.00009776041,0.0002436588,0.000346182,0.0002547428,0.0001356571,0.0003240275,0.0003072254,0.0007278541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001644024,"about_ca_system_score_gemma":0.0002089881,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007429315,"about_ca_topic_score_gemma":0.0005342092,"domain_scores_codex":[0.999918,0.0000121395,0.000006132364,0.00001920454,0.00002784181,0.00001671917],"domain_scores_gemma":[0.999869,0.00002041923,0.00005180596,0.00001020889,0.00001956691,0.00002897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001874848,0.00004141239,0.003595083,0.00009169243,0.000007572045,0.0002109291,0.00003660627,0.00009741981,0.9902941,0.0001617163,0.0000961539,0.005179911],"study_design_scores_gemma":[0.0000670662,0.0009279948,0.2117161,0.00007868428,0.00006698847,0.004341312,0.0004049582,0.002618939,0.7509727,0.0006166645,0.02814696,0.00004178544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883041,0.00161155,0.006548892,0.0001108102,0.00003954209,0.00003332183,0.001295045,0.0001747848,0.001881832],"genre_scores_gemma":[0.9852495,0.0007634436,0.005056578,0.00005509035,0.00001102078,0.00002262133,0.00368769,0.00002433399,0.005129792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001383737,"threshold_uncertainty_score":0.004629135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1340880348915996,"score_gpt":0.2193835458666523,"score_spread":0.08529551097505278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}