{"id":"W2002884340","doi":"10.1128/aem.01987-10","title":"Analyses of both the <i>alkB</i> Gene Transcriptional Start Site and <i>alkB</i> Promoter-Inducing Properties of <i>Rhodococcus</i> sp. Strain BCP1 Grown on <i>n</i> -Alkanes","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"AlkB; Strain (injury); Gene; Biology; Genetics; Rhodococcus; Promoter; Bacteria; Rhodococcus equi; Computational biology; Microbiology; Gene expression; Escherichia coli; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002158302,0.0002109556,0.0002446198,0.00003583843,0.00009384983,0.000008442875,0.00010602,0.0001634609,0.00001249064],"category_scores_gemma":[0.000005762796,0.0001464178,0.00006054389,0.0000398459,0.0005354829,0.000005071313,0.00006715325,0.0001872509,0.000001391114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000406862,"about_ca_system_score_gemma":0.00001268573,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004177289,"about_ca_topic_score_gemma":0.00001622949,"domain_scores_codex":[0.9990582,0.00004297447,0.0002696088,0.0003835426,0.00004859836,0.000197027],"domain_scores_gemma":[0.999594,0.000006883075,0.0001072249,0.0002428477,0.000006714448,0.0000423402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009385154,0.0000955185,0.0002802111,0.00004458644,0.00006478664,2.518716e-7,0.0001390791,0.00003552248,0.9977781,0.00004288872,0.00005483623,0.001370377],"study_design_scores_gemma":[0.0004438318,0.0001884324,0.001919909,0.00001104882,0.00005042653,0.00006647117,0.0000847479,0.000002699685,0.988965,0.00001356595,0.008091025,0.0001628626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980814,0.001059882,0.00004838421,0.00009489749,0.0001178132,0.0002612793,0.0002881535,0.000006986241,0.00004115034],"genre_scores_gemma":[0.9983501,0.0005247522,0.0004109934,0.0001997899,0.000151309,0.00001556217,0.0002774852,0.00001806442,0.00005193886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008813111,"threshold_uncertainty_score":0.5970744,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01004898936783174,"score_gpt":0.1919773020062371,"score_spread":0.1819283126384054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}