{"id":"W2002884340","doi":"10.1128/aem.01987-10","title":"Analyses of both the <i>alkB</i> Gene Transcriptional Start Site and <i>alkB</i> Promoter-Inducing Properties of <i>Rhodococcus</i> sp. Strain BCP1 Grown on <i>n</i> -Alkanes","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"AlkB; Strain (injury); Gene; Biology; Genetics; Rhodococcus; Promoter; Bacteria; Rhodococcus equi; Computational biology; Microbiology; Gene expression; Escherichia coli; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001533574,0.000587274,0.0005062739,0.0003223978,0.0001275817,0.000364271,0.0003100185,0.0003150192,0.0005283228],"category_scores_gemma":[0.0004206111,0.0002089727,0.0004646108,0.0005166449,0.0002249852,0.0002111221,0.0002725605,0.0007802385,0.0006465091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003426343,"about_ca_system_score_gemma":0.0003812341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003667993,"about_ca_topic_score_gemma":0.002319854,"domain_scores_codex":[0.9997749,0.00002156331,0.00001936027,0.00005603929,0.00008272795,0.0000455432],"domain_scores_gemma":[0.9996126,0.00008263899,0.0001117956,0.00003506541,0.00009903088,0.00005894576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003666549,0.00001793718,0.000246563,0.00002155477,0.000002544162,0.00002328543,0.00001687792,0.00003321529,0.9989266,0.00001842558,0.00000991937,0.0006464034],"study_design_scores_gemma":[0.00000906501,0.000193962,0.01890062,0.0000123318,0.00002643194,0.0003688135,0.000130301,0.0007138351,0.9779874,0.00004274743,0.001598601,0.00001582882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898168,0.0008594883,0.003848191,0.0001137929,0.00001920901,0.00005228178,0.003591318,0.00009467152,0.001604274],"genre_scores_gemma":[0.9696341,0.001176712,0.01047215,0.0001211849,0.00002131608,0.000170676,0.01498291,0.0002011381,0.003219869],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003667993,"threshold_uncertainty_score":0.007293284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01004898936783174,"score_gpt":0.1919773020062371,"score_spread":0.1819283126384054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}