{"id":"W2003291503","doi":"10.3390/d6040665","title":"Genotyping-By-Sequencing for Plant Genetic Diversity Analysis: A Lab Guide for SNP Genotyping","year":2014,"lang":"en","type":"article","venue":"Diversity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Genotyping; Biology; Genetic diversity; Genome; Computational biology; SNP genotyping; Genetics; Genotype; Gene; Medicine; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00647961,0.004080552,0.003171769,0.006692455,0.001933917,0.001802193,0.004929495,0.002840232,0.06730158],"category_scores_gemma":[0.007425184,0.004037316,0.00247209,0.003686607,0.001466959,0.001691107,0.002685102,0.006922652,0.1248178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008718075,"about_ca_system_score_gemma":0.002996796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002159743,"about_ca_topic_score_gemma":0.005882596,"domain_scores_codex":[0.9954596,0.001748197,0.0005687722,0.0007352938,0.001200716,0.0002874513],"domain_scores_gemma":[0.9950806,0.001463624,0.0003840427,0.001737486,0.0009851644,0.0003490578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005807295,0.0006934472,0.001702268,0.003009638,0.0003138559,0.001230759,0.0007035813,0.003515423,0.1967635,0.01230444,0.4890782,0.2901042],"study_design_scores_gemma":[0.0002498142,0.0004207238,0.00275007,0.0004880509,0.0001211053,0.001796804,0.0001277148,0.009191443,0.0568586,0.01115164,0.9165416,0.0003023723],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.001441274,0.001243335,0.9282569,0.0007867058,0.0006809713,0.004968876,0.02093527,0.02939582,0.01229076],"genre_scores_gemma":[0.00189935,0.001040296,0.9581087,0.0008286699,0.0001470025,0.006827871,0.01752029,0.004238768,0.009389061],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.06730158,"threshold_uncertainty_score":0.2251462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02265000712962527,"score_gpt":0.231673655562909,"score_spread":0.2090236484332837,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}