{"id":"W2003329271","doi":"10.1104/pp.113.233718","title":"A Plastid without a Genome: Evidence from the Nonphotosynthetic Green Algal Genus <i>Polytomella</i>","year":2014,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Western University","funders":"","keywords":"Plastid; Biology; Chlamydomonas reinhardtii; Genome; Genetics; Mitochondrial DNA; DNA sequencing; Illumina dye sequencing; Transcriptome; Gene; Gene expression; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001527385,0.0002395816,0.0002730558,0.000017353,0.0001713642,0.00001638265,0.000480565,0.0001278506,0.00002697187],"category_scores_gemma":[0.000080681,0.0001668047,0.0001036548,0.0000492652,0.0001949851,9.149726e-7,0.0003086924,0.0001181629,0.00007587865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007628173,"about_ca_system_score_gemma":0.00004277965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000596093,"about_ca_topic_score_gemma":0.0002918045,"domain_scores_codex":[0.9986268,0.0001652149,0.0002127469,0.0005246475,0.000101671,0.000368964],"domain_scores_gemma":[0.9989891,0.0002228319,0.0001115526,0.0005591821,0.00004271961,0.00007461957],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000154019,0.0000222328,0.002792949,0.000007801753,0.0001126157,0.000001002608,0.0001634455,0.0000917994,0.9953179,0.00001150678,0.0007507603,0.0005740124],"study_design_scores_gemma":[0.001654925,0.001561713,0.3641989,0.000104632,0.0002507402,0.0001139002,0.0002133539,0.001722348,0.352123,0.0009991061,0.2757496,0.001307846],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996284,0.0022714,0.0001978809,0.0002517549,0.0002615734,0.000197168,0.0002583773,0.00000794367,0.0002698886],"genre_scores_gemma":[0.9969233,0.0007477705,0.0002271455,0.0009310815,0.0008546236,0.00005003137,0.0001367704,0.00002463905,0.0001046708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6431949,"threshold_uncertainty_score":0.6802099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01228133604017447,"score_gpt":0.2121481111917415,"score_spread":0.199866775151567,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}