{"id":"W2003345264","doi":"10.1016/j.jmb.2008.02.018","title":"Genome Comparison and Proteomic Characterization of Thermus thermophilus Bacteriophages P23-45 and P74-26: Siphoviruses with Triplex-forming Sequences and the Longest Known Tails","year":2008,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":70,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"ORFS; Genome; Thermus thermophilus; Biology; Genetics; Siphoviridae; Gene; GC-content; Bacteriophage; Open reading frame; Peptide sequence; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001865691,0.0005510542,0.0005944383,0.0005560539,0.0004038966,0.0004709202,0.0002246418,0.0003854658,0.0006746266],"category_scores_gemma":[0.0003047635,0.0002031308,0.0006012737,0.0005603312,0.0002310551,0.0002872372,0.0002733258,0.0005501442,0.0003914631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003438245,"about_ca_system_score_gemma":0.0004223494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001777239,"about_ca_topic_score_gemma":0.001878562,"domain_scores_codex":[0.9998711,0.00001569591,0.00001113841,0.00003780943,0.00003598179,0.00002820513],"domain_scores_gemma":[0.999665,0.00006655305,0.00008819689,0.00002332111,0.00005458844,0.0001023574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003023878,0.00002721402,0.0008293869,0.00005398344,0.00001619092,0.0000810053,0.00007879694,0.00005217849,0.9973063,0.00003716322,0.00006687333,0.001148592],"study_design_scores_gemma":[0.00006380976,0.001123689,0.3000397,0.0000435941,0.0004737053,0.0021684,0.001037566,0.00276652,0.6801351,0.0002380149,0.01185169,0.00005819106],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965612,0.0006181297,0.0008632758,0.00007231685,0.00001692079,0.00001646008,0.00148378,0.0000254401,0.0003424602],"genre_scores_gemma":[0.9814587,0.0005855398,0.004272686,0.0001413748,0.00003253639,0.00006053341,0.01095512,0.00007462848,0.002418943],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001777239,"threshold_uncertainty_score":0.003533781,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01025682717893463,"score_gpt":0.2355949994614571,"score_spread":0.2253381722825225,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}