{"id":"W2003447887","doi":"10.1139/g09-001","title":"Genome-wide analysis of rice (<i>Oryza sativa</i> L. subsp. <i>japonica</i>) TATA box and Y Patch promoter elements","year":2009,"lang":"en","type":"article","venue":"Genome","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agentúra na Podporu Výskumu a Vývoja","keywords":"TATA box; Oryza sativa; Biology; Promoter; Genome; Genetics; Oryza; CAAT box; Japonica; Gene; Computational biology; Botany; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002034411,0.0001496291,0.0001812718,0.0002108931,0.0001664457,0.0001548716,0.0001325117,0.0001089022,0.0003507287],"category_scores_gemma":[0.0002933248,0.000102141,0.0003339499,0.0002485932,0.00008876007,0.00007970994,0.0001241699,0.0001750659,0.00006488236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000147583,"about_ca_system_score_gemma":0.0001965802,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003934204,"about_ca_topic_score_gemma":0.007295429,"domain_scores_codex":[0.9999474,0.00001118094,0.000002034416,0.00002467337,0.000008810406,0.000005839968],"domain_scores_gemma":[0.999902,0.0000532546,0.00001786939,0.000005545115,0.00001112584,0.00001024918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001366481,0.0003373623,0.2477169,0.0004174849,0.0005194218,0.0005405986,0.0003644419,0.1258156,0.5842744,0.001978818,0.001028156,0.03564047],"study_design_scores_gemma":[0.00009871345,0.0003052788,0.6056857,0.00001052355,0.0002402573,0.0004709914,0.0001701768,0.340892,0.04923485,0.0009650551,0.001890531,0.00003593387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976366,0.00003624695,0.001686192,0.0000149848,6.541567e-7,0.000003371222,0.0004666379,0.00003626632,0.0001190758],"genre_scores_gemma":[0.9935358,0.00004001236,0.00347258,0.00001146822,0.000001312444,0.000009332472,0.002787386,0.00001014326,0.0001321142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003934204,"threshold_uncertainty_score":0.007822633,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005459124490214019,"score_gpt":0.2178021724101185,"score_spread":0.2123430479199044,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}