{"id":"W2003516452","doi":"10.1093/nar/gks1158","title":"The BioGRID interaction database: 2013 update","year":2012,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1031,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; Institute for Research in Immunology and Cancer","funders":"Biotechnology and Biological Sciences Research Council; National Center for Research Resources; Directorate for Biological Sciences; National Institutes of Health; Canadian Institutes of Health Research; European Commission; Wellcome Trust","keywords":"Biology; Workflow; Graphical user interface; Schizosaccharomyces pombe; Schizosaccharomyces; Budding yeast; Plug-in; Model organism; Computational biology; World Wide Web; Database; Bioinformatics; Saccharomyces cerevisiae; Computer science; Yeast; Operating system; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001574066,0.00009396252,0.00006499397,0.00004561768,0.0004285697,0.00009932444,0.0003767997,0.0001127596,0.000104602],"category_scores_gemma":[0.00006851566,0.00006451105,0.00005147848,0.0001419271,0.000186223,0.00001621784,0.0004405768,0.0003389808,0.0006350628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002292046,"about_ca_system_score_gemma":0.00003757067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003017202,"about_ca_topic_score_gemma":0.00002752185,"domain_scores_codex":[0.9987031,0.0001167552,0.000174766,0.0001472479,0.000257563,0.0006005247],"domain_scores_gemma":[0.9990905,0.00004032228,0.00004055111,0.0005657776,0.000117828,0.0001450208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001855473,0.00008865682,0.001715023,0.00002095775,0.00009245431,8.745505e-7,0.000140611,0.00001395379,0.08800143,0.002802021,0.8361543,0.07078413],"study_design_scores_gemma":[0.0001519477,0.00006833349,0.0006741276,0.000006819852,0.000003268743,0.00001221371,0.0002682298,0.0006591792,0.008305859,0.0001010549,0.9896533,0.00009567559],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9355685,0.01343761,0.005407755,0.006591629,0.002518966,0.0009318736,0.00009970397,0.00004927178,0.03539468],"genre_scores_gemma":[0.9928925,0.00343646,0.0005922664,0.0002035001,0.00111026,0.00002750802,0.0001844773,0.00002124007,0.001531798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1534989,"threshold_uncertainty_score":0.8162658,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03486140134147318,"score_gpt":0.3395035651109046,"score_spread":0.3046421637694314,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}