{"id":"W2003634768","doi":"10.1002/pmic.201000776","title":"ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses","year":2011,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research","keywords":"Phosphoproteomics; Proteomics; Proteome; Computational biology; UniProt; Computer science; Bioinformatics; Biology; Phosphorylation; Protein phosphorylation; Phosphoprotein; Protein kinase A; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002919897,0.002141871,0.001509389,0.001820694,0.0006003793,0.001942223,0.001576199,0.000620768,0.00639127],"category_scores_gemma":[0.002513783,0.0008472552,0.0009332479,0.001615238,0.0005372562,0.001449343,0.001605668,0.001857603,0.003728516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006982128,"about_ca_system_score_gemma":0.001759704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001224296,"about_ca_topic_score_gemma":0.001860215,"domain_scores_codex":[0.9990718,0.0001912913,0.0001267513,0.0002359089,0.0003117275,0.00006251004],"domain_scores_gemma":[0.9988004,0.0004780729,0.0001784889,0.0001846268,0.00021319,0.0001451511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.006357681,0.0008837914,0.008447859,0.00374272,0.001563165,0.002443048,0.0009280675,0.03801144,0.3956273,0.03183246,0.1673737,0.3427888],"study_design_scores_gemma":[0.001373504,0.0007515099,0.0111133,0.0002622426,0.0003683144,0.002130249,0.0001779777,0.4031405,0.2609717,0.03783203,0.2814423,0.0004361874],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.02097802,0.001039818,0.7682723,0.0007520032,0.0002315282,0.0005919868,0.0262899,0.1777889,0.004055666],"genre_scores_gemma":[0.08082961,0.001661407,0.832789,0.0009230576,0.0001328888,0.001613418,0.06478568,0.0126677,0.004597284],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.00639127,"threshold_uncertainty_score":0.0213809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1388490000652285,"score_gpt":0.3122435707891326,"score_spread":0.173394570723904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}