{"id":"W2003634768","doi":"10.1002/pmic.201000776","title":"ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses","year":2011,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research","keywords":"Phosphoproteomics; Proteomics; Proteome; Computational biology; UniProt; Computer science; Bioinformatics; Biology; Phosphorylation; Protein phosphorylation; Phosphoprotein; Protein kinase A; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002246677,0.0003934941,0.0003744501,0.000194493,0.0003464217,0.00008462117,0.000398347,0.0002128437,0.0003563886],"category_scores_gemma":[0.0001495395,0.0003710858,0.0001095075,0.000432107,0.0001428183,0.0004483702,0.0002860805,0.0004071069,0.000119516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001241837,"about_ca_system_score_gemma":0.00006905467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002651931,"about_ca_topic_score_gemma":0.00001996628,"domain_scores_codex":[0.9980606,0.000008339895,0.0006499895,0.0005224085,0.0002206987,0.0005379259],"domain_scores_gemma":[0.9985014,0.00003002539,0.0002554141,0.0007362555,0.0001558665,0.0003210967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004729996,0.000343207,0.001132647,0.0008024347,0.0001736979,0.00001038296,0.007389873,0.00006687443,0.9532252,0.01080871,0.0002061488,0.02536784],"study_design_scores_gemma":[0.0004381372,0.0001451167,0.000140193,0.0001031666,0.00003129613,0.00005055402,0.0005699082,0.001320605,0.9712282,0.02217228,0.003181742,0.0006188108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5077361,0.00008593874,0.4675046,0.0001907725,0.00003137446,0.004914518,0.0001974958,0.0008473733,0.01849179],"genre_scores_gemma":[0.1495886,0.0000766812,0.840845,0.0001509779,0.00005579876,0.008231789,0.00002350522,0.00006150563,0.0009661326],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.3733404,"threshold_uncertainty_score":0.9998741,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1388490000652285,"score_gpt":0.3122435707891326,"score_spread":0.173394570723904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}