{"id":"W2003806891","doi":"10.1016/j.sjbs.2013.12.004","title":"Extensive homologous recombination in classical swine fever virus: A re-evaluation of homologous recombination events in the strain AF407339","year":2014,"lang":"en","type":"article","venue":"Saudi Journal of Biological Sciences","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Genome; Recombination; Homologous recombination; Non-allelic homologous recombination; Genetics; Biology; Breakpoint; Phylogenetic tree; Homologous chromosome; Genetic recombination; Gene; Chromosome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01309671,0.0001434165,0.0003784881,0.00009746217,0.0001350885,0.00001872134,0.0006319705,0.0001650918,0.0002407281],"category_scores_gemma":[0.003234533,0.00004801067,0.0001418758,0.000843616,0.0003954642,0.0002135158,0.00007820233,0.000249961,0.000006217936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007304882,"about_ca_system_score_gemma":0.00002442444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000107006,"about_ca_topic_score_gemma":0.0005653724,"domain_scores_codex":[0.9955135,0.002565466,0.0007472681,0.0002962179,0.0005553078,0.0003222332],"domain_scores_gemma":[0.9977564,0.001256616,0.0006401475,0.00005176811,0.0002386572,0.00005638852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0006443945,0.00229024,0.3954225,0.00002092028,0.00004288559,0.00003398379,0.0006167762,0.0009533454,0.06261193,0.01327608,0.001476807,0.5226102],"study_design_scores_gemma":[0.0004105676,0.00186805,0.8995198,0.00004232436,0.00001708741,0.00001329367,0.0008322992,0.001218499,0.00007278389,0.09570996,0.0001950592,0.0001003089],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910079,0.0002600156,0.00003505706,0.00739345,0.0001729259,0.0002816622,0.000005734515,0.000006430564,0.0008368235],"genre_scores_gemma":[0.9990371,0.0001949559,0.000101077,0.0005299686,0.0001005214,0.00001110079,0.00001362279,5.516343e-7,0.00001111268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5225099,"threshold_uncertainty_score":0.4539084,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1035141358546519,"score_gpt":0.3175873635210849,"score_spread":0.2140732276664331,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}