{"id":"W2003893915","doi":"10.1007/s00705-002-0833-3","title":"Nucleotide sequence analysis of RNA-2 of a flat apple isolate of Cherry rasp leaf virus with regions showing greater identity to animal picornaviruses than to related plant viruses","year":2002,"lang":"en","type":"article","venue":"Archives of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria; Canadian Food Inspection Agency","funders":"National Institutes of Health","keywords":"Biology; Nepovirus; RNA; Open reading frame; Capsid; Virology; Genetics; Virus; Plant virus; Untranslated region; Nucleotide; Nucleic acid sequence; Genome; Movement protein; Amino acid; Phylogenetic tree; Peptide sequence; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001853509,0.0001975729,0.000788286,0.0002398788,0.00009732833,0.000008175552,0.0005669976,0.00006953914,0.0001502365],"category_scores_gemma":[0.0001455507,0.00009126008,0.0002148328,0.0009907642,0.0005544273,0.0001399854,0.0003391842,0.0001473022,0.000008535825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009771717,"about_ca_system_score_gemma":0.000007658817,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004839638,"about_ca_topic_score_gemma":0.01007773,"domain_scores_codex":[0.9981511,0.0002036371,0.0005567026,0.0003927203,0.0003026486,0.0003931722],"domain_scores_gemma":[0.9986805,0.0006562256,0.0003012855,0.0001732661,0.00005658844,0.0001321073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000857993,0.0001210773,0.03913399,0.00002098797,0.0007325197,0.00001536974,0.001730132,0.0002576287,0.9564591,0.0002172352,0.00004359524,0.0004103781],"study_design_scores_gemma":[0.0002881375,0.002688618,0.8082213,0.0001080062,0.0003580969,0.000009616921,0.0003923249,0.0006149616,0.1865595,0.0002903639,0.0002296838,0.0002393483],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975017,0.0001364166,0.00004384422,0.0003453153,0.00001350171,0.0002589224,0.00137294,0.00002035614,0.0003070132],"genre_scores_gemma":[0.9991992,0.0002395187,0.000367601,0.0001047964,0.00001256656,0.00001405345,0.00001472188,0.000002613984,0.00004499398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7698996,"threshold_uncertainty_score":0.7316117,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07742835132162207,"score_gpt":0.2776950764496025,"score_spread":0.2002667251279804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}