{"id":"W2004018836","doi":"10.1371/journal.pone.0071484","title":"Metagenomic Guilt by Association: An Operonic Perspective","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Computational biology; Annotation; Operon; Biology; Genetics; Intergenic region; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003442394,0.0008775175,0.00129225,0.002960582,0.0009425553,0.003557541,0.00129367,0.001139991,0.002129562],"category_scores_gemma":[0.006965091,0.0003025531,0.001029634,0.002409874,0.002798247,0.003620519,0.002645525,0.001537263,0.0003062197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001487203,"about_ca_system_score_gemma":0.000743923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008654507,"about_ca_topic_score_gemma":0.0009827319,"domain_scores_codex":[0.9980141,0.000750031,0.00008744537,0.0004346561,0.0005402523,0.000173507],"domain_scores_gemma":[0.9966455,0.001845432,0.0005262136,0.0003954309,0.0003294478,0.0002578955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0009588489,0.0003521042,0.1197991,0.003473681,0.0009010258,0.002271331,0.004852826,0.05252975,0.2143168,0.4115506,0.003325922,0.185668],"study_design_scores_gemma":[0.00002865897,0.0005821884,0.1397132,0.0003500252,0.0002960158,0.001613933,0.004142502,0.1653496,0.02176023,0.634244,0.03172569,0.0001939419],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5216655,0.01477993,0.4337425,0.005175885,0.0001909652,0.0001624858,0.001788217,0.0007699531,0.02172454],"genre_scores_gemma":[0.9102902,0.002472376,0.08500531,0.0002968636,0.00006787395,0.0001147186,0.00103003,0.00008279586,0.0006398725],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003557541,"threshold_uncertainty_score":0.01820534,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01499205232930984,"score_gpt":0.2106005741366381,"score_spread":0.1956085218073283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}