{"id":"W2004018836","doi":"10.1371/journal.pone.0071484","title":"Metagenomic Guilt by Association: An Operonic Perspective","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Computational biology; Annotation; Operon; Biology; Genetics; Intergenic region; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001353711,0.0001104076,0.0001379452,0.00001473912,0.00007065506,0.00006308901,0.0002835268,0.0001482193,0.0003030907],"category_scores_gemma":[0.00005488209,0.0001074367,0.00004658814,0.00003688915,0.00002075849,0.000009973039,0.0001214221,0.00009713768,0.0002712702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009137145,"about_ca_system_score_gemma":0.00003898504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008180583,"about_ca_topic_score_gemma":0.00002123852,"domain_scores_codex":[0.9992534,0.00003175938,0.0001602456,0.0001940585,0.0001247066,0.0002358586],"domain_scores_gemma":[0.9992227,0.000006207857,0.00009115998,0.0004323092,0.0001558727,0.00009174328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001196546,0.0005500717,0.000998806,0.00001276449,0.0007328181,1.84801e-7,0.0002416806,0.00001410638,0.9410583,0.0003293924,0.05552821,0.0005217271],"study_design_scores_gemma":[0.004762403,0.003976227,0.006100058,0.0000818254,0.0009257317,0.000009058494,0.003794842,0.01238239,0.8943445,0.01149133,0.05936966,0.002761946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861245,0.001501699,0.0002013871,0.001138119,0.00004441397,0.0003250313,0.00003158628,0.00001811538,0.01061515],"genre_scores_gemma":[0.9875175,0.0002717037,0.003131183,0.0008678166,0.0003422488,0.00005503515,0.0001783487,0.0000227384,0.007613383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04671375,"threshold_uncertainty_score":0.4381142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01499205232930984,"score_gpt":0.2106005741366381,"score_spread":0.1956085218073283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}