{"id":"W2004325203","doi":"10.1093/nar/gkm807","title":"Bacteriome.org an integrated protein interaction database for E. coli","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Database; Protein–protein interaction; Computational biology; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007785878,0.002922126,0.002178493,0.00700415,0.0008825739,0.001847312,0.002644954,0.002019217,0.01918941],"category_scores_gemma":[0.002857757,0.000930079,0.001018877,0.008170112,0.0002744094,0.001685085,0.002093138,0.001537913,0.01675728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001011138,"about_ca_system_score_gemma":0.00272782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005524332,"about_ca_topic_score_gemma":0.00743778,"domain_scores_codex":[0.9995364,0.0000736074,0.0000895109,0.00009487247,0.0001464112,0.0000592331],"domain_scores_gemma":[0.999254,0.0002310872,0.0001441132,0.0001150648,0.0001190829,0.0001364917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002163909,0.000424264,0.0076392,0.0117902,0.0005933156,0.001429981,0.0003487947,0.005801059,0.0455024,0.01223393,0.8208643,0.0912086],"study_design_scores_gemma":[0.0005577646,0.0001749781,0.01409237,0.0006445957,0.0003546666,0.001473001,0.000167783,0.01013029,0.01130306,0.009825799,0.9510921,0.0001836032],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.005842707,0.002854026,0.01483179,0.0003619668,0.00008986687,0.0002412207,0.9492568,0.02122219,0.00529938],"genre_scores_gemma":[0.006322729,0.001579329,0.01883109,0.0001566835,0.00001669484,0.0002832848,0.9710032,0.0009378268,0.0008692186],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01918941,"threshold_uncertainty_score":0.06419498,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05486792781172273,"score_gpt":0.3703592043417946,"score_spread":0.3154912765300719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}