{"id":"W2004325203","doi":"10.1093/nar/gkm807","title":"Bacteriome.org an integrated protein interaction database for E. coli","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Database; Protein–protein interaction; Computational biology; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002168675,0.0001281919,0.0001152123,0.0001378116,0.0002078136,0.00007543204,0.0003257538,0.0002086258,0.00008802953],"category_scores_gemma":[0.0001440176,0.0001162487,0.00005506251,0.0002125599,0.0001318562,0.00001919048,0.0001820101,0.0003291903,0.00004657979],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005677471,"about_ca_system_score_gemma":0.0001096782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004784919,"about_ca_topic_score_gemma":0.0001301432,"domain_scores_codex":[0.9985948,0.00007565333,0.000273294,0.0002976977,0.0002190857,0.000539533],"domain_scores_gemma":[0.9988945,0.00002635648,0.00005570883,0.0004825213,0.0003524113,0.0001885456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007725293,0.0001088941,0.0001896676,0.00004211663,0.00003028686,0.000002587976,0.0000992767,0.000002666252,0.9609028,0.0003252496,0.004838171,0.03268575],"study_design_scores_gemma":[0.001170702,0.001554635,0.001381488,0.00005802712,0.000006949168,0.00001400453,0.001103845,0.003077133,0.2772821,0.0002074608,0.7138348,0.0003088441],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9769797,0.00004907251,0.0199716,0.0001199254,0.0001481705,0.0007972111,0.00007063252,0.00001786285,0.001845802],"genre_scores_gemma":[0.9901371,0.00002655381,0.006103219,0.0001227644,0.0005051164,0.00007402518,0.001105078,0.00003513357,0.001891014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7089966,"threshold_uncertainty_score":0.4740482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05486792781172273,"score_gpt":0.3703592043417946,"score_spread":0.3154912765300719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}