{"id":"W2004649763","doi":"10.1128/jcm.43.8.3704-3712.2005","title":"Genomic Polymorphisms for<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>Diagnostics","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Paratuberculosis; Biology; Mycobacterium avium subsp. paratuberculosis; Mycobacterium; Microbiology; Strain (injury); Organism; Virology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001913441,0.0002676748,0.001393399,0.0002211748,0.00007436195,0.00003303893,0.0003542206,0.0005195343,0.000557849],"category_scores_gemma":[0.003965257,0.0002021753,0.001026858,0.000142728,0.0002968202,0.0001333234,0.000106641,0.0009408153,0.0002621322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001077217,"about_ca_system_score_gemma":0.0006328118,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005187002,"about_ca_topic_score_gemma":0.00001227895,"domain_scores_codex":[0.996265,0.0002751402,0.002331305,0.0003383149,0.0001233177,0.0006669043],"domain_scores_gemma":[0.9942175,0.003101613,0.0008747213,0.0003837403,0.0007148921,0.0007075871],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004188895,0.001654761,0.2519964,0.00009829794,0.0006996047,0.0001414643,0.00005473583,0.000006271387,0.4520484,0.0001388509,0.2710135,0.0179589],"study_design_scores_gemma":[0.007852646,0.005205626,0.1325753,0.0001615723,0.0005845408,0.002973108,0.00001748324,0.00001901633,0.01713209,0.0001429529,0.8330468,0.0002889296],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9790543,0.003297838,0.0003016136,0.0145122,0.001772751,0.0004464336,0.0001449564,0.00002153158,0.0004483889],"genre_scores_gemma":[0.959135,0.008294507,0.01291411,0.01098974,0.007933213,0.00001816442,0.00008516553,0.0000577043,0.0005723872],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5620333,"threshold_uncertainty_score":0.824447,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04996872935515957,"score_gpt":0.38218168492443,"score_spread":0.3322129555692704,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}