{"id":"W2004787320","doi":"10.1186/1471-2164-10-481","title":"Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni","year":2009,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":148,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; U.S. Public Health Service; National Institutes of Health","keywords":"Regulon; Biology; Campylobacter jejuni; Oxidative stress; Transcriptome; Microbiology; Superoxide dismutase; Gene expression profiling; Mutant; Genetics; Biochemistry; Gene expression; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001326977,0.0000887783,0.0001837212,0.00000670084,0.00005056033,0.000007160188,0.0001665717,0.00008187153,0.00003581333],"category_scores_gemma":[0.00004230105,0.00003141585,0.00005800328,0.0001042368,0.00007884573,0.00004491253,0.00004796295,0.00005143791,0.000001119699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001256463,"about_ca_system_score_gemma":0.000008498906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007916965,"about_ca_topic_score_gemma":0.0002363413,"domain_scores_codex":[0.9993167,0.0001153732,0.0002281421,0.0001549314,0.00006223189,0.0001226469],"domain_scores_gemma":[0.9995178,0.0001024497,0.0002201752,0.00007510285,0.00005218527,0.00003226949],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003369499,0.00004310121,0.06748623,0.000005380442,0.000004221268,6.80867e-8,0.0001701037,0.000005439706,0.9236488,0.0002129389,0.000007404484,0.00838255],"study_design_scores_gemma":[0.00007125673,0.0001473032,0.8794563,0.00001233706,0.00001030411,0.000001840844,0.0001275156,0.00003999325,0.1193376,0.0003170946,0.0004173252,0.0000611288],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990705,0.00004232887,0.00001389088,0.0004536679,0.00006139085,0.0001493216,0.00008664789,0.000007430685,0.0001148247],"genre_scores_gemma":[0.999507,0.00007099666,0.00006932907,0.0001346467,0.00007533137,0.000001332135,0.00005298874,5.728345e-7,0.00008787766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8119701,"threshold_uncertainty_score":0.1281101,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0230094803917901,"score_gpt":0.2200382940364823,"score_spread":0.1970288136446922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}