{"id":"W2005058616","doi":"10.1186/1471-2180-9-223","title":"Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Health Canada; Akademie Věd České Republiky; University of Nottingham; Trent University; Micropathology; Nottingham Trent University","keywords":"Biology; Cronobacter sakazakii; Multilocus sequence typing; Cronobacter; Parasitology; Typing; Genetics; Microbiology; Sequence (biology); Computational biology; Evolutionary biology; Genotype; Enterobacter; Bacteria; Gene; Zoology; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003488352,0.0003425279,0.0005030536,0.000072964,0.0000974389,0.00006135343,0.0003269856,0.00035793,0.00007902179],"category_scores_gemma":[0.00006259279,0.0002454195,0.00007299265,0.0001268577,0.0005261424,0.00002137679,0.0001329468,0.0003049522,0.000008478482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002369874,"about_ca_system_score_gemma":0.0002368881,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004281129,"about_ca_topic_score_gemma":0.0003352695,"domain_scores_codex":[0.9977444,0.0002804178,0.000526856,0.0008094775,0.00007626,0.0005626172],"domain_scores_gemma":[0.9986845,0.00007615151,0.0002868092,0.0005274685,0.0002850852,0.0001399418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00245386,0.00008609721,0.1610293,0.00005319907,0.0001163718,0.000005588871,0.00004253548,0.00002355466,0.8347776,0.00007634563,0.0001655287,0.001169995],"study_design_scores_gemma":[0.003913528,0.004654001,0.7213455,0.000210917,0.0001092406,0.0004606973,0.0001228218,0.00001927209,0.2608622,0.00008192717,0.00736346,0.000856341],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979469,0.0003828474,0.0007571548,0.0001277726,0.0001021649,0.0004109644,0.0001427691,0.00001573435,0.0001136615],"genre_scores_gemma":[0.9925645,0.0001886133,0.006153356,0.0003232501,0.000123316,0.00001259309,0.0002213078,0.00003044455,0.0003826124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5739154,"threshold_uncertainty_score":0.9999998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02541922456611405,"score_gpt":0.3029534996811386,"score_spread":0.2775342751150245,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}