{"id":"W2005784983","doi":"10.1371/journal.pone.0020521","title":"Snapshot of the Eukaryotic Gene Expression in Muskoxen Rumen—A Metatranscriptomic Approach","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":132,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University; University of Lethbridge; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Genome Alberta; Alberta Innovates; Alberta Innovates Bio Solutions; Genome Canada","keywords":"Metagenomics; Biology; Rumen; Glycoside hydrolase; Cellulase; Microbiome; Transcriptome; Microbiology; Gene; Biochemistry; Genetics; Gene expression; Fermentation; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008924462,0.00007804413,0.0001810231,0.00001026618,0.00004550691,0.000003712096,0.0002275864,0.00005800029,0.0003673927],"category_scores_gemma":[0.00001957418,0.00002477466,0.00006213537,0.0001934771,0.0000796113,0.00006183842,0.00004342435,0.0000900763,0.000007363646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007698173,"about_ca_system_score_gemma":0.000003424917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005967473,"about_ca_topic_score_gemma":0.00002673063,"domain_scores_codex":[0.99928,0.0001161351,0.0001628895,0.0001688534,0.0001221021,0.0001499754],"domain_scores_gemma":[0.9997776,0.00003826523,0.00006145772,0.00006206934,0.00002712374,0.00003348282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004439514,0.001472575,0.02965152,0.00001442563,0.000009915384,3.721943e-7,0.0001816805,2.797605e-7,0.9683722,0.00009801653,0.00003270168,0.0001219287],"study_design_scores_gemma":[0.0001092351,0.00008043514,0.4927677,0.00003448241,0.00001205029,4.240735e-7,0.00012327,0.00001268579,0.506031,0.0007699483,0.000008813328,0.00005001545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960881,0.0001502665,0.000001221264,0.0001804725,0.00002257784,0.0002050154,0.0000143584,0.0000106378,0.003327351],"genre_scores_gemma":[0.9988869,0.00005226885,0.0008217738,0.00009841624,0.00003105727,0.00002464681,0.00002226263,6.241389e-7,0.00006207728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4631162,"threshold_uncertainty_score":0.4022693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1021943588215241,"score_gpt":0.2004686661133002,"score_spread":0.09827430729177615,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}