{"id":"W2005895632","doi":"10.1038/nature10983","title":"The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6380,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; BC Cancer Agency; University of British Columbia","funders":"NIHR Cambridge Biomedical Research Centre; BC Cancer Agency; King's College London; University of Southern California; National Institute for Health and Care Research; Division of Mathematical Sciences; National Institutes of Health; University of Cambridge; Cancer Research UK; National Human Genome Research Institute; Michael Smith Health Research BC","keywords":"Biology; Transcriptome; Breast cancer; Gene; Copy-number variation; Genetics; Comparative genomic hybridization; Copy number analysis; Genome; Computational biology; Gene expression profiling; Population; Cancer; Gene expression; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001555432,0.0001593234,0.0002988264,0.0008292363,0.0002969384,0.0006408783,0.0001895109,0.0003010293,0.001225069],"category_scores_gemma":[0.0004271358,0.0001768669,0.0002953513,0.0009052818,0.0002888713,0.0002599524,0.0003300297,0.0002590446,0.0003965349],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001897165,"about_ca_system_score_gemma":0.0002060892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008767842,"about_ca_topic_score_gemma":0.001103801,"domain_scores_codex":[0.9997714,0.00001884881,0.00001525763,0.00008319501,0.0000493176,0.00006192672],"domain_scores_gemma":[0.9997451,0.00007725054,0.00007263857,0.00002914255,0.0000331998,0.00004273407],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001527828,0.00004887077,0.1978432,0.0001572137,0.0001925563,0.0004810273,0.0007533372,0.0005785914,0.7727516,0.0006794845,0.0007502356,0.02423612],"study_design_scores_gemma":[0.00001945539,0.000173085,0.9777831,0.00001090606,0.000131229,0.001311699,0.0004326912,0.0006209985,0.01366252,0.0009153691,0.00492604,0.000012912],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962591,0.0008130775,0.0005195427,0.0001078483,0.000004798269,0.000005511335,0.001427743,0.00002594647,0.0008365744],"genre_scores_gemma":[0.9934561,0.0006189722,0.0004976115,0.0001045036,0.00002640676,0.00001806294,0.004128434,0.00002956393,0.001120297],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001225069,"threshold_uncertainty_score":0.004098237,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004193202501426613,"score_gpt":0.2199815789133006,"score_spread":0.215788376411874,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}