{"id":"W2006102249","doi":"10.1021/bi049158c","title":"FTIR Spectroscopy of the K Photointermediate of <i>Neurospora</i> Rhodopsin:  Structural Changes of the Retinal, Protein, and Water Molecules after Photoisomerization","year":2004,"lang":"en","type":"article","venue":"Biochemistry","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Bacteriorhodopsin; Photoisomerization; Rhodopsin; Chemistry; Halorhodopsin; Halobacterium salinarum; Isomerization; Neurospora; Halobacteriaceae; Retinal; Photochemistry; Halobacterium; Photoprotein; Hydrogen bond; Molecule; Crystallography; Chromophore; Stereochemistry; Neurospora crassa; Membrane; Biochemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001693704,0.000415492,0.0002161985,0.0001632775,0.0002485015,0.0002052684,0.0003372213,0.0003369984,0.0009189734],"category_scores_gemma":[0.000327377,0.0001524071,0.0002458502,0.0002216255,0.0002537261,0.000331946,0.0001871325,0.0007053689,0.0002817473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002400285,"about_ca_system_score_gemma":0.0001899879,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00271688,"about_ca_topic_score_gemma":0.001227862,"domain_scores_codex":[0.9998785,0.00001499571,0.000007175955,0.00003369121,0.00003385347,0.00003181092],"domain_scores_gemma":[0.999779,0.00004387675,0.0000679505,0.00001413096,0.00006378455,0.0000313105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005297952,0.000006466616,0.0001768588,0.00001844653,0.000003892821,0.00003428871,0.00004612291,0.00003951563,0.9989923,0.00002426662,0.00002188477,0.000583004],"study_design_scores_gemma":[0.000003689102,0.00007004695,0.01075656,0.00001065864,0.00001683217,0.0001254115,0.0001616063,0.001114884,0.9867915,0.00002387493,0.0009117232,0.00001319178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995413,0.000774708,0.00221507,0.00006230417,0.00002151635,0.000009099048,0.000358138,0.00004639716,0.00109994],"genre_scores_gemma":[0.9939929,0.0007445084,0.002483766,0.00006066798,0.000007807456,0.00002004927,0.000629083,0.00005132509,0.00201004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00271688,"threshold_uncertainty_score":0.005402148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009965312007333879,"score_gpt":0.2413703988453418,"score_spread":0.2314050868380079,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}