{"id":"W2006117179","doi":"10.1371/journal.pgen.0030010","title":"Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution","year":2007,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Biology; Long terminal repeat; Retrotransposon; Genetics; Gene; Promoter; Locus (genetics); Gene family; Phenotype; Genome; Gene expression; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001548065,0.000131746,0.0001347482,0.00001172565,0.0002320966,0.00002156077,0.0002321053,0.00009483727,0.0001451644],"category_scores_gemma":[0.00002909108,0.00005214588,0.00007966693,0.000346975,0.00007903212,0.00002290717,0.0000376824,0.00009907987,0.00002114189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004961503,"about_ca_system_score_gemma":0.00001112837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006840414,"about_ca_topic_score_gemma":0.0002630905,"domain_scores_codex":[0.9988012,0.00005847392,0.0003096531,0.0002427749,0.0002869513,0.0003009542],"domain_scores_gemma":[0.9995311,0.00005965929,0.000117179,0.0001164774,0.00008402515,0.00009152279],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001717886,0.0001487239,0.01206301,0.00001170661,0.00002763822,0.00000256524,0.0001887202,0.00002685149,0.9857243,0.00006779189,0.00002593721,0.00169553],"study_design_scores_gemma":[0.0001930214,0.0003683904,0.1828824,0.00003717854,0.00006364063,0.00001521758,0.0002352548,0.0001350659,0.8146559,0.0003040936,0.0009432257,0.0001665584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973191,0.0003951607,0.00001142538,0.001122851,0.00008122766,0.0005865247,0.00006100968,0.00003815399,0.0003845235],"genre_scores_gemma":[0.9993402,0.00005100216,0.0001014299,0.00003605719,0.0001090841,0.00001630395,0.00004563862,0.00000194453,0.0002983881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1710684,"threshold_uncertainty_score":0.2126447,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02890725011418438,"score_gpt":0.2326279100388165,"score_spread":0.2037206599246321,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}