{"id":"W2006117179","doi":"10.1371/journal.pgen.0030010","title":"Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution","year":2007,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Biology; Long terminal repeat; Retrotransposon; Genetics; Gene; Promoter; Locus (genetics); Gene family; Phenotype; Genome; Gene expression; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002555665,0.0001836602,0.0001901279,0.0002772263,0.0001420866,0.0002804638,0.0003423359,0.000259571,0.0004640469],"category_scores_gemma":[0.0002031632,0.0001719687,0.0001732994,0.0001927625,0.0003504202,0.0002181127,0.000411882,0.0004737446,0.000281065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002495704,"about_ca_system_score_gemma":0.0001613229,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002553721,"about_ca_topic_score_gemma":0.0003581776,"domain_scores_codex":[0.9998314,0.00002475577,0.00001033862,0.00006872152,0.00003436677,0.00003035543],"domain_scores_gemma":[0.9998556,0.00002760698,0.00005382983,0.00001919526,0.0000182443,0.0000254533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009737778,0.000009437912,0.004706935,0.00002768837,0.000006842733,0.0002802623,0.00009349996,0.0001150903,0.9892429,0.0005220483,0.00002538033,0.004872436],"study_design_scores_gemma":[0.00006650217,0.000424244,0.1441125,0.00005608199,0.0001186027,0.009440491,0.0003574222,0.006414601,0.8250828,0.001543923,0.01234353,0.00003930508],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891374,0.001080737,0.008532285,0.00005335567,0.000008715824,0.00001083086,0.0001064625,0.0001328277,0.0009373773],"genre_scores_gemma":[0.9933133,0.0004520074,0.004813781,0.00006758481,0.00001096016,0.00001510746,0.0002851871,0.00003582142,0.001006209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004640469,"threshold_uncertainty_score":0.00181073,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02890725011418438,"score_gpt":0.2326279100388165,"score_spread":0.2037206599246321,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}