{"id":"W2006389041","doi":"10.1097/00126334-200412150-00017","title":"Diminished Representation of HIV-1 Variants Containing Select Drug Resistance-Conferring Mutations in Primary HIV-1 Infection","year":2004,"lang":"en","type":"article","venue":"JAIDS Journal of Acquired Immune Deficiency Syndromes","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; Jewish General Hospital; McGill University","funders":"","keywords":"Resistance mutation; Viremia; Virology; Population; Biology; Mutation; Reverse transcriptase; Virus; Medicine; Genetics; RNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009077116,0.0002364822,0.0008353991,0.001152567,0.0001308928,0.00003573344,0.0001419133,0.00008887699,0.00003595183],"category_scores_gemma":[0.0005100975,0.0002102843,0.0002466819,0.001415636,0.0001116695,0.0005737816,0.00004100188,0.0001664916,0.00002428702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005618015,"about_ca_system_score_gemma":0.0006638311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004589693,"about_ca_topic_score_gemma":0.0000175084,"domain_scores_codex":[0.9971659,0.000126652,0.001489557,0.0002593722,0.0006079781,0.00035054],"domain_scores_gemma":[0.9982197,0.0002231911,0.0008472269,0.0002572889,0.0003608067,0.00009174264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003227228,0.003925955,0.851087,0.001007618,0.001383929,0.002654642,0.04086676,0.005222598,0.08323756,0.001406945,0.0008199988,0.005159754],"study_design_scores_gemma":[0.01012734,0.0004410249,0.9645409,0.002076298,0.0003947754,0.001046479,0.002277052,0.00007181194,0.01781164,0.0008391485,0.00008258339,0.0002909296],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935852,0.0009050007,0.001483911,0.001324417,0.0002837658,0.0003720453,0.000005376372,0.00004175898,0.00199853],"genre_scores_gemma":[0.9917482,0.0002642505,0.005686696,0.00001914589,0.00002896807,0.00001585396,0.00005897485,0.00003421501,0.002143744],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1134539,"threshold_uncertainty_score":0.8575147,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01707884839973028,"score_gpt":0.27033170960418,"score_spread":0.2532528612044497,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}