{"id":"W2006436416","doi":"10.1038/nsmb.2496","title":"Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA","year":2013,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Derepression; Biology; Enhancer; Endogenous retrovirus; Long terminal repeat; Retrotransposon; Gene; Repressor; Genetics; Gene expression; Psychological repression; Transposable element; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001624972,0.0004405998,0.0005342092,0.0001695012,0.0002969796,0.00003744755,0.000555271,0.001441715,0.001051765],"category_scores_gemma":[0.0002435437,0.000332824,0.0002338361,0.0001871161,0.000306844,0.0001380906,0.0001509966,0.001411853,0.0001514149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006379987,"about_ca_system_score_gemma":0.00005198346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001359005,"about_ca_topic_score_gemma":0.00000197157,"domain_scores_codex":[0.9972469,0.0006272662,0.0004644644,0.0008339401,0.00005728781,0.0007701552],"domain_scores_gemma":[0.9987991,0.000076875,0.0002064873,0.0006877527,0.0001756153,0.00005416995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003404208,0.00001454749,0.0001502653,0.00001408026,0.0001487797,0.000007845521,0.0001613822,0.000003181828,0.9882114,0.0003996086,0.007619751,0.002928765],"study_design_scores_gemma":[0.001206118,0.0002660322,0.001751717,0.00004843527,0.00003825782,0.0001491327,0.00003812975,0.00000710837,0.9878148,0.0005563687,0.007730903,0.0003930375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9783341,0.0163973,0.0008297787,0.001351657,0.001642573,0.0006569713,0.00007623906,0.0001655473,0.0005458518],"genre_scores_gemma":[0.9950767,0.00005908351,0.0008881136,0.000838208,0.00006704181,0.0000496064,0.0006204198,0.00004570838,0.002355088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01674265,"threshold_uncertainty_score":0.9999124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004114783659224872,"score_gpt":0.2575756497600034,"score_spread":0.2534608661007785,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}