{"id":"W2006463885","doi":"10.1186/1471-2180-12-264","title":"Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Institut National de la Recherche Agronomique; Eusko Jaurlaritza; Scottish Government; Rural and Environment Science and Analytical Services Division","keywords":"Biology; Restriction fragment length polymorphism; Paratuberculosis; Mycobacterium avium subspecies paratuberculosis; Pulsed-field gel electrophoresis; Genotype; Typing; Genetics; Single-nucleotide polymorphism; SNP array; Insertion sequence; Virology; Microbiology; Mycobacterium; Gene; Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002608591,0.0002044328,0.0001511788,0.0004540122,0.0001276732,0.0002721777,0.0001673943,0.0003900104,0.0008423614],"category_scores_gemma":[0.0008468085,0.00008797521,0.0001290058,0.0003720568,0.0001815576,0.0001641166,0.0001679704,0.0002321694,0.0002776871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009370702,"about_ca_system_score_gemma":0.00006681884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004970279,"about_ca_topic_score_gemma":0.0008909714,"domain_scores_codex":[0.9997528,0.00004237703,0.00003539241,0.00007491643,0.00004870389,0.00004573143],"domain_scores_gemma":[0.9993831,0.0002151812,0.0001718255,0.00006033499,0.00009828695,0.00007130547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001066574,0.0002811077,0.552047,0.0001348671,0.00008046787,0.0003414543,0.0006742471,0.0002905776,0.4287165,0.00007579729,0.0001327878,0.0161587],"study_design_scores_gemma":[0.00001442358,0.0004628892,0.9782881,0.00001717492,0.0000493251,0.001482975,0.0004472698,0.0003248736,0.0182718,0.0000665851,0.0005681536,0.000006488409],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993172,0.0001340611,0.0001665173,0.000007106538,0.000001559226,0.000005396021,0.0001160209,0.000002727816,0.0002494018],"genre_scores_gemma":[0.9990415,0.00005532489,0.0004620066,0.00001306878,0.000002550105,0.000007570888,0.000304482,0.000002914715,0.0001106098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008423614,"threshold_uncertainty_score":0.002817988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04723452751054042,"score_gpt":0.2775204812925362,"score_spread":0.2302859537819958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}