{"id":"W2006528877","doi":"10.1186/1471-2164-12-s3-s7","title":"Profiling ascidian promoters as the primordial type of vertebrate promoter","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Medical Science, University of Tokyo; Japan Science and Technology Agency; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; McGill University","keywords":"Biology; Promoter; Vertebrate; DNA microarray; Computational biology; Genetics; Evolutionary biology; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001058082,0.0001928116,0.0001452894,0.0004317033,0.0001836077,0.0002522286,0.0001651925,0.000206949,0.0009052287],"category_scores_gemma":[0.0002485986,0.0001233539,0.0001219234,0.0003471521,0.00016293,0.0001407322,0.0001739326,0.0003178662,0.000326969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002498659,"about_ca_system_score_gemma":0.0002049092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001489295,"about_ca_topic_score_gemma":0.003771674,"domain_scores_codex":[0.9998885,0.000006057557,0.000005020708,0.00006046271,0.00002578753,0.00001414707],"domain_scores_gemma":[0.9998073,0.00003968116,0.0000372867,0.00001999599,0.00005964566,0.00003613699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006397888,0.000004472786,0.003188882,0.0000623512,0.000003781219,0.00002330461,0.00005187422,0.00005756927,0.994194,0.00006265675,0.0000458365,0.002241242],"study_design_scores_gemma":[0.00001325753,0.0001728601,0.1469596,0.00002814481,0.00006831923,0.0005051845,0.0001625913,0.004395082,0.8392007,0.0002756857,0.008201678,0.00001694591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9762006,0.001480336,0.01620743,0.00005152581,0.00002027134,0.00005822414,0.003207143,0.0002248918,0.002549632],"genre_scores_gemma":[0.9734552,0.0005877508,0.01997428,0.00007399845,0.00000932522,0.00006506513,0.003286169,0.00007367524,0.002474501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001489295,"threshold_uncertainty_score":0.003028274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04166592277029167,"score_gpt":0.2625267509283828,"score_spread":0.2208608281580912,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}