{"id":"W2006933206","doi":"10.1038/nbt926","title":"The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data","year":2004,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":641,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto; Canada Research Chairs; University of New Brunswick; Lunenfeld-Tanenbaum Research Institute","funders":"","keywords":"Human proteome project; Interaction network; Computer science; Representation (politics); Protein–protein interaction; Proteome; Database; World Wide Web; Computational biology; Proteomics; Bioinformatics; Biology; Gene; Political science; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003941659,0.002716139,0.001752787,0.003311094,0.001543907,0.005388044,0.005151083,0.002281448,0.02221662],"category_scores_gemma":[0.01369748,0.001752538,0.002181401,0.006020074,0.0009129259,0.006301339,0.003919482,0.005825193,0.02272292],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001167276,"about_ca_system_score_gemma":0.002902592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003339277,"about_ca_topic_score_gemma":0.002669822,"domain_scores_codex":[0.9982342,0.0002969492,0.0003236922,0.0002291577,0.0007213068,0.0001948284],"domain_scores_gemma":[0.9925648,0.001672747,0.000520832,0.003663381,0.001075219,0.0005029389],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001413921,0.0003011776,0.003304607,0.0009385889,0.0002186488,0.0005247109,0.0003702549,0.006305583,0.01753248,0.07537191,0.7698404,0.1238776],"study_design_scores_gemma":[0.0005230384,0.0002101969,0.004430976,0.0004555577,0.0002006107,0.001545971,0.0002154186,0.09087379,0.05529077,0.2176294,0.6282139,0.000410407],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.005238307,0.0004369902,0.6377535,0.001036975,0.0007322865,0.0004061469,0.09729936,0.2487527,0.00834382],"genre_scores_gemma":[0.06605937,0.002120077,0.4549035,0.001656333,0.0005475977,0.00192089,0.4122699,0.04569728,0.01482504],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02221662,"threshold_uncertainty_score":0.07432199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01644121626248273,"score_gpt":0.3135688808018951,"score_spread":0.2971276645394124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}