{"id":"W2007178799","doi":"10.1093/nar/gks1109","title":"PIECE: a database for plant gene structure comparison and evolution","year":2012,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Gene; Genome; Gene family; Intron; Database; Phylogenetic tree; Comparative genomics; Gene prediction; Genomics; Genetics; Computational biology; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001246646,0.002586895,0.002842223,0.005944466,0.001067362,0.002127842,0.003310391,0.001483164,0.02478407],"category_scores_gemma":[0.002939363,0.001488552,0.001473437,0.008300609,0.0003286836,0.003379743,0.002325019,0.001704824,0.0219195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004696021,"about_ca_system_score_gemma":0.001413555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001063326,"about_ca_topic_score_gemma":0.0009073175,"domain_scores_codex":[0.9991948,0.0001315065,0.0001669466,0.0002569728,0.0001671527,0.00008260397],"domain_scores_gemma":[0.9989422,0.0002642651,0.0002420311,0.0002735915,0.0001387949,0.0001390971],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004974513,0.0004677828,0.007562264,0.01564812,0.001152326,0.001750394,0.00127019,0.004305698,0.198979,0.01062375,0.5138401,0.2394259],"study_design_scores_gemma":[0.0009107236,0.0005258626,0.01902065,0.0007099423,0.0005926667,0.002508629,0.0002625847,0.008304821,0.02779485,0.01008774,0.9290127,0.0002689259],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.02023742,0.004787815,0.1034743,0.0002449054,0.0002064461,0.0003704698,0.7632107,0.09867097,0.008796919],"genre_scores_gemma":[0.01462744,0.001168774,0.09067282,0.0001007203,0.00004037813,0.0006478028,0.8854286,0.005557196,0.001756243],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.02478407,"threshold_uncertainty_score":0.08291095,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05324122072319078,"score_gpt":0.347738542947668,"score_spread":0.2944973222244772,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}