{"id":"W2007390378","doi":"10.1186/1471-2334-9-215","title":"HIV-1 subtype and viral tropism determination for evaluating antiretroviral therapy options: an analysis of archived Kenyan blood samples","year":2009,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Japan International Cooperation Agency; Kanazawa University","keywords":"Medical microbiology; Virology; Parasitology; Tropism; Population; Viral load; Biology; Medicine; Tissue tropism; Immunology; Human immunodeficiency virus (HIV); Virus; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001159452,0.000133242,0.0002747472,0.0003250492,0.0002336716,0.00002619195,0.00006942556,0.00006002329,0.00005867895],"category_scores_gemma":[0.0001747909,0.0001122137,0.0001742976,0.0001324364,0.0001224088,0.0001152685,0.00001239918,0.00005290557,0.000006193815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002072868,"about_ca_system_score_gemma":0.00007617949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009961209,"about_ca_topic_score_gemma":0.0001251144,"domain_scores_codex":[0.9989775,0.0002817893,0.000204505,0.0002539536,0.00004803176,0.0002342251],"domain_scores_gemma":[0.999293,0.0002737105,0.0001113075,0.0001866412,0.00009200825,0.00004336399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005380828,0.001119763,0.8814135,0.00001817457,0.0007808312,0.000001190561,0.0002176859,0.00007238771,0.07178194,0.0007102381,0.00000929311,0.04333697],"study_design_scores_gemma":[0.003725019,0.004611151,0.9845927,0.000009173413,0.001162999,0.000005318874,0.00005462034,0.0006669791,0.004138049,0.0008858466,0.00002361009,0.0001245176],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948416,0.002592942,0.001357502,0.00001092193,0.00003237076,0.0004334513,0.0006409024,0.00005719768,0.00003307964],"genre_scores_gemma":[0.9973527,0.0002640444,0.0004931168,0.00002075031,0.00002029738,0.00007206267,0.001708525,0.000007727621,0.00006081132],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1031793,"threshold_uncertainty_score":0.457594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03163322372978233,"score_gpt":0.3281870439882774,"score_spread":0.296553820258495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}