{"id":"W2007390378","doi":"10.1186/1471-2334-9-215","title":"HIV-1 subtype and viral tropism determination for evaluating antiretroviral therapy options: an analysis of archived Kenyan blood samples","year":2009,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Japan International Cooperation Agency; Kanazawa University","keywords":"Medical microbiology; Virology; Parasitology; Tropism; Population; Viral load; Biology; Medicine; Tissue tropism; Immunology; Human immunodeficiency virus (HIV); Virus; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008308839,0.00033949,0.0002687653,0.001114689,0.0005524236,0.0005212993,0.0003172286,0.0004372617,0.001189442],"category_scores_gemma":[0.001833302,0.0002374505,0.0001546557,0.0008674424,0.0002779268,0.0002097437,0.0001787578,0.0003610272,0.0003497709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002104069,"about_ca_system_score_gemma":0.0002454214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001765919,"about_ca_topic_score_gemma":0.003320707,"domain_scores_codex":[0.999597,0.0001010159,0.00006282267,0.00006318848,0.0001289724,0.00004703124],"domain_scores_gemma":[0.9994842,0.0001492453,0.0001240126,0.00003956692,0.0001437035,0.00005925407],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007766917,0.0002019409,0.8971646,0.0001760275,0.00005909604,0.001592992,0.0007948069,0.0001197068,0.0815181,0.00006142016,0.0003801272,0.01715451],"study_design_scores_gemma":[0.00003108487,0.0008744658,0.9726394,0.00009716898,0.00007467867,0.006034384,0.0005745131,0.0006112048,0.01445045,0.00002694751,0.004573489,0.00001227281],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996657,0.001112435,0.0005285459,0.00004072142,0.00001533945,0.0001302679,0.0007772819,0.000009858071,0.0007286039],"genre_scores_gemma":[0.9908568,0.0008675812,0.005759944,0.00009214156,0.00003236331,0.000158304,0.001691284,0.000007062337,0.0005345747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001765919,"threshold_uncertainty_score":0.004394233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03163322372978233,"score_gpt":0.3281870439882774,"score_spread":0.296553820258495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}