{"id":"W2007404669","doi":"10.1074/jbc.m602938200","title":"Differences in Protonation of Ubiquinone and Menaquinone in Fumarate Reductase from Escherichia coli","year":2006,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Institutes of Health; Deutsche Forschungsgemeinschaft; Canadian Institutes of Health Research; U.S. Department of Veterans Affairs","keywords":"Escherichia coli; Protonation; Fumarate reductase; Chemistry; Biochemistry; Organic chemistry; Gene; Ion","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002816769,0.00007614111,0.0002380496,0.00002492602,0.00001184249,0.00001257526,0.00008389574,0.0001183543,0.0001859333],"category_scores_gemma":[0.00007427912,0.00004930438,0.0000237039,0.00009409836,0.0000963475,0.00007111093,0.00002277117,0.0001386928,4.744903e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002689318,"about_ca_system_score_gemma":0.00002368777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008966957,"about_ca_topic_score_gemma":0.00000930283,"domain_scores_codex":[0.9992145,0.00005132562,0.0004160606,0.0001136735,0.0001089285,0.00009545942],"domain_scores_gemma":[0.9995193,0.00005929607,0.0002988114,0.00004892708,0.00004584149,0.00002781377],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001848286,0.00006591487,0.03156933,0.00001632845,0.000001793852,0.00001081943,0.00002391531,0.000006329231,0.9680077,0.00001197647,0.00002035576,0.00008064824],"study_design_scores_gemma":[0.0004446035,0.00009356761,0.1633996,0.00004292366,0.000003153044,0.000006768962,0.00005775903,0.00001320906,0.833755,0.002119134,0.00001282532,0.00005146608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991351,0.0003841477,0.00001698203,0.00006227987,0.00005320028,0.0000656234,0.000009125946,0.000003088771,0.0002704569],"genre_scores_gemma":[0.9991148,0.00003989586,0.0006802944,0.00001111189,0.0001220587,0.000003862312,0.000005632764,0.000001824578,0.0000205763],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1342528,"threshold_uncertainty_score":0.2035839,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01669292069759786,"score_gpt":0.2265977704428058,"score_spread":0.2099048497452079,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}