{"id":"W2007567771","doi":"10.1142/s0219720009004199","title":"GENE LOSS UNDER NEIGHBORHOOD SELECTION FOLLOWING WHOLE GENOME DUPLICATION AND THE RECONSTRUCTION OF THE ANCESTRAL POPULUS GENOME","year":2009,"lang":"en","type":"article","venue":"Journal of Bioinformatics and Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Gene duplication; Biology; Populus trichocarpa; Genetics; Gene; Chromosome; Genome evolution; Segmental duplication; Phylogenomics; Gene family; Computational biology; Phylogenetic tree","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001517453,0.0001413601,0.0004347749,0.0006459791,0.0003076548,0.0004954037,0.0005443305,0.0002221743,0.000369596],"category_scores_gemma":[0.005760282,0.000144936,0.0003098917,0.0004117074,0.0004538969,0.00035885,0.0004797321,0.0002904653,0.00005866076],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004043758,"about_ca_system_score_gemma":0.0004410439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001568903,"about_ca_topic_score_gemma":0.002779903,"domain_scores_codex":[0.9995889,0.0001582648,0.00001787023,0.00009555477,0.00009970362,0.00003965036],"domain_scores_gemma":[0.9977564,0.001467786,0.0002751779,0.0002054672,0.0001828922,0.0001121461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001675829,0.0001287438,0.2596561,0.0001863059,0.0002875244,0.0007495148,0.0006340847,0.4566933,0.1355143,0.01216096,0.0003666833,0.1319466],"study_design_scores_gemma":[0.00003685196,0.0002175109,0.05858998,0.0000127123,0.00008548667,0.0004381142,0.0001606331,0.8981016,0.03605136,0.005670771,0.0006084597,0.00002650055],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9658009,0.0000500076,0.03373521,0.00002662233,0.000001690008,0.000008676148,0.00002965549,0.00008321318,0.0002639394],"genre_scores_gemma":[0.9811624,0.00003872053,0.01841369,0.00001290537,0.000002958615,0.00001451956,0.0001298248,0.00003166803,0.0001933386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001568903,"threshold_uncertainty_score":0.008025169,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006985693473040731,"score_gpt":0.2295840473966514,"score_spread":0.2225983539236106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}