{"id":"W2007604850","doi":"10.1038/nature08586","title":"Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis","year":2009,"lang":"en","type":"article","venue":"Nature","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"RNA; Biology; Computational biology; Ribozyme; ENCODE; Riboswitch; Non-coding RNA; DNA; Genome; Genetics; Metagenomics; Sequence (biology); Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009232664,0.0001554894,0.0002051723,0.00005388317,0.00009679453,0.00002800601,0.0001733052,0.0006159313,0.00009993518],"category_scores_gemma":[0.00002966093,0.0001387678,0.0001875953,0.0001779641,0.00002508199,7.525593e-7,0.0000443717,0.0003059096,0.000002980596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001275824,"about_ca_system_score_gemma":0.00002314437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002569158,"about_ca_topic_score_gemma":0.00001533371,"domain_scores_codex":[0.9991693,0.00003216442,0.0001527933,0.000327087,0.0001254449,0.0001931559],"domain_scores_gemma":[0.9995927,0.000005817256,0.00007175264,0.0001982963,0.00007041317,0.000061065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005190853,0.00001685339,0.001355893,0.000001515604,0.0004576661,0.000001063333,0.00002341708,0.00004552941,0.9891235,0.00005784295,0.007525248,0.001339628],"study_design_scores_gemma":[0.001289885,0.0003570157,0.371274,0.000003928598,0.0007733966,0.00001172488,0.00004204971,0.00003666506,0.1480721,0.0008240025,0.4766421,0.0006731397],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993368,0.004607886,0.0002100052,0.0004089893,0.0002067884,0.00009340225,0.0001879116,0.000004594139,0.0009124667],"genre_scores_gemma":[0.9956601,0.0002361279,0.001482776,0.0008987021,0.0006076309,0.00000350468,0.0004207398,0.000008846147,0.0006815945],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8410513,"threshold_uncertainty_score":0.5658789,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004869563056649223,"score_gpt":0.2411210897131336,"score_spread":0.2362515266564844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}