{"id":"W2007610885","doi":"10.3389/fgene.2014.00429","title":"Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species","year":2014,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":477,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Hamilton Health Sciences","funders":"","keywords":"Biology; Burkholderia; Clade; Phylogenetic tree; Genus; Phylogenetics; 16S ribosomal RNA; Burkholderia cepacia complex; Evolutionary biology; Genetics; Gene; Zoology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002252719,0.0002610011,0.0003118657,0.001130503,0.0002677926,0.0004903717,0.0001803158,0.0003093424,0.0003340584],"category_scores_gemma":[0.0004312862,0.0001044318,0.0002546585,0.0007793193,0.0002045695,0.00046196,0.000415834,0.0003071091,0.0002276864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001197264,"about_ca_system_score_gemma":0.0001749169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006991546,"about_ca_topic_score_gemma":0.0006134698,"domain_scores_codex":[0.999818,0.00003321774,0.00001716556,0.00006022974,0.0000278827,0.0000434843],"domain_scores_gemma":[0.999787,0.00004392998,0.00006379284,0.00001783716,0.00003301811,0.00005440601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003407552,0.0000684264,0.09420402,0.0001696416,0.00004377886,0.0002653354,0.0005396748,0.0005210043,0.8797839,0.0002101939,0.00007190247,0.02378138],"study_design_scores_gemma":[0.00002140254,0.0007655087,0.8938808,0.000106308,0.0001824553,0.002474032,0.001787561,0.01047173,0.0818611,0.0009544079,0.00744707,0.00004762156],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936656,0.00202219,0.003169162,0.00007737051,0.000007436339,0.00003064646,0.0004873407,0.0000270881,0.0005130663],"genre_scores_gemma":[0.9903765,0.0008194796,0.007224149,0.00004811047,0.000009590944,0.00002048768,0.001279537,0.000009525324,0.000212662],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001130503,"threshold_uncertainty_score":0.001390159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009604092866056626,"score_gpt":0.2203615803332292,"score_spread":0.2107574874671726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}