{"id":"W2008516116","doi":"10.1002/gcc.20771","title":"Combined classical cytogenetics and microarray‐based genomic copy number analysis reveal frequent 3;5 rearrangements in clear cell renal cell carcinoma","year":2010,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Renal cell carcinoma treatment","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Cancer Institute; Hospital for Sick Children","keywords":"Biology; Comparative genomic hybridization; Uniparental disomy; SNP array; Genetics; Copy number analysis; Cytogenetics; Copy-number variation; Karyotype; Locus (genetics); Loss of heterozygosity; Gene duplication; Chromosome; Cancer research; Single-nucleotide polymorphism; Genome; Gene; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001241408,0.000330636,0.0006119594,0.0001782767,0.00009284077,0.00004595916,0.000100473,0.0001912457,0.0006008642],"category_scores_gemma":[0.000002904834,0.000285077,0.0001636862,0.0003277285,0.0001745722,0.00003589022,0.00007867854,0.0002865714,0.00001684887],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001827842,"about_ca_system_score_gemma":0.0001814196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007166961,"about_ca_topic_score_gemma":0.0005793187,"domain_scores_codex":[0.9981869,0.00006140137,0.0003944976,0.0006378569,0.0002821295,0.0004372305],"domain_scores_gemma":[0.9989943,0.00003504402,0.000127901,0.0004356215,0.00007351691,0.0003336366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002877513,0.0001664466,0.5812645,0.0001222261,0.0001070237,0.0000999144,0.0001301375,0.00002113381,0.4160999,0.000002175324,0.0002757321,0.001423047],"study_design_scores_gemma":[0.005296286,0.0004774658,0.6807359,0.00002746606,0.001163309,0.00001891754,0.0000717263,0.0004582703,0.3080648,0.00001129888,0.003360747,0.0003137683],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937779,0.004290411,0.000009490657,0.0004146878,0.000150576,0.0004850451,0.00007350091,0.00001984135,0.000778581],"genre_scores_gemma":[0.9954793,0.001119621,0.001572001,0.0003297227,0.0001857528,0.00008296755,0.00009317863,0.00004627222,0.001091128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.108035,"threshold_uncertainty_score":0.9999601,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01390520552671136,"score_gpt":0.2563333272269326,"score_spread":0.2424281217002212,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}