{"id":"W2008634531","doi":"10.1371/journal.pone.0048595","title":"Functional and Structural Divergence of an Unusual LTR Retrotransposon Family in Plants","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Division of Biological Infrastructure; Division of Molecular and Cellular Biosciences; National Science Foundation","keywords":"Retrotransposon; Biology; Long terminal repeat; Genome; Genetics; Interspersed repeat; Centromere; Genome evolution; Transposable element; Gene; Human genome; Chromosome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004316704,0.00004706327,0.00007853864,0.000006168317,0.0000466897,0.000004823843,0.00004685745,0.00003616371,0.0001918827],"category_scores_gemma":[0.000008538257,0.00001972564,0.00001133197,0.00008131887,0.00002427008,0.0001001001,0.00001524144,0.00004107186,0.000003989884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004930345,"about_ca_system_score_gemma":0.000002178884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001945315,"about_ca_topic_score_gemma":0.0002933076,"domain_scores_codex":[0.9995452,0.00002241707,0.00009230246,0.00008741545,0.0001357099,0.0001169377],"domain_scores_gemma":[0.9998496,0.00003401887,0.00002422534,0.00001867821,0.00001599014,0.0000574953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001749948,0.0001642432,0.4081731,0.000003754792,0.000007012028,1.910701e-7,0.0001097591,0.000001343554,0.589776,0.0001013669,0.000001658268,0.00164405],"study_design_scores_gemma":[0.00008333635,0.0001165305,0.9782121,0.00001335256,0.000007860763,9.814826e-7,0.00008970278,0.0001032734,0.02101715,0.0002934921,0.000009165882,0.0000530227],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999419,0.0002004953,3.047219e-7,0.00009369379,0.00003208547,0.00006354076,0.0000866066,0.000008396673,0.0000958223],"genre_scores_gemma":[0.9995759,0.00002558668,0.0001666732,0.00002327967,0.0001271219,0.000003129123,0.0000513696,2.636088e-7,0.00002668877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.570039,"threshold_uncertainty_score":0.2100981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05832321884478286,"score_gpt":0.2110697279386438,"score_spread":0.1527465090938609,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}