{"id":"W2009087111","doi":"10.1038/modpathol.2014.85","title":"PTEN loss is associated with upgrading of prostate cancer from biopsy to radical prostatectomy","year":2014,"lang":"en","type":"article","venue":"Modern Pathology","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":false,"ca_institutions":"Queen's University","funders":"National Cancer Institute; Prostate Cancer Foundation; Ontario Institute for Cancer Research; National Institutes of Health; Prostate Cancer Canada; Patrick C. Walsh Prostate Cancer Research Fund","keywords":"PTEN; Prostatectomy; Prostate cancer; Medicine; Biopsy; Immunohistochemistry; Prostate; Cancer; Pathology; Urology; Oncology; Internal medicine; Biology; PI3K/AKT/mTOR pathway","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002211328,0.0002000709,0.0005373872,0.0001562904,0.00006683241,0.00001142137,0.0001130789,0.0001449122,0.0001190317],"category_scores_gemma":[0.00008894259,0.0001370249,0.00006253696,0.000270445,0.0002730117,0.00004595959,0.00006634965,0.0002333231,0.00002160457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001589439,"about_ca_system_score_gemma":0.0001784906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002417621,"about_ca_topic_score_gemma":0.00004272462,"domain_scores_codex":[0.9983228,0.0001066368,0.0002546145,0.0004874328,0.0003282579,0.0005001844],"domain_scores_gemma":[0.9990707,0.00008290604,0.0001036342,0.000326222,0.0001869418,0.0002295824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0055214,0.0008366562,0.7632825,0.0001713305,0.0007537271,0.001833697,0.0124857,0.00007475352,0.1710057,0.0001017105,0.001061359,0.04287155],"study_design_scores_gemma":[0.04505993,0.00902781,0.615397,0.002331098,0.001102704,0.0005356772,0.0003766281,0.01420987,0.2976049,0.007752439,0.00510205,0.001499968],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993872,0.0004291743,0.000939607,0.003122357,0.00007207265,0.0007625332,0.0002460754,0.00006733806,0.0004888392],"genre_scores_gemma":[0.9967082,0.00007954747,0.0007474284,0.0005463209,0.0000709963,0.0001991256,0.0001228442,0.00004519901,0.001480323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1478855,"threshold_uncertainty_score":0.5587714,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02012191259370198,"score_gpt":0.3041953524961638,"score_spread":0.2840734399024618,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}