{"id":"W2009160581","doi":"10.1371/journal.pgen.1003378","title":"Association Mapping and the Genomic Consequences of Selection in Sunflower","year":2013,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Sunflower and Safflower Cultivation","field":"Agricultural and Biological Sciences","cited_by":142,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome Canada; National Institute of Food and Agriculture; Genome British Columbia; Georgia Research Alliance; Emory University; U.S. Department of Agriculture; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Association mapping; Linkage disequilibrium; Genetics; Quantitative trait locus; Selective sweep; Germplasm; Population; Evolutionary biology; Locus (genetics); Helianthus annuus; Genetic diversity; Genome-wide association study; Allele; Sunflower; Genotype; Haplotype; Single-nucleotide polymorphism; Gene; Botany; Agronomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001844467,0.00004940454,0.00008846101,0.000009177322,0.00005064604,0.00002849967,0.00006119303,0.00005078596,0.0001630437],"category_scores_gemma":[0.00007682186,0.00001728453,0.00002051585,0.0001581738,0.00005068964,0.00004532611,0.00001831428,0.00005352758,0.000007453101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002380485,"about_ca_system_score_gemma":0.000004032023,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002120113,"about_ca_topic_score_gemma":0.0003122496,"domain_scores_codex":[0.9994718,0.00007376263,0.0001554959,0.00009323367,0.0001064885,0.00009914901],"domain_scores_gemma":[0.9996647,0.0001601767,0.00007596728,0.0000149778,0.00006897826,0.0000152515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005474595,0.00001747012,0.2319555,0.00000235936,0.000007649723,3.907519e-8,0.0002854547,0.0000119794,0.7638301,0.000038143,0.00005696372,0.003788921],"study_design_scores_gemma":[0.0002958458,0.000040769,0.9489953,0.00001236639,0.00001001888,8.904404e-7,0.0004741691,0.003124201,0.04474336,0.001842893,0.0003802987,0.00007990035],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978754,0.0002357248,0.00000198968,0.00132125,0.00003350326,0.0002170683,0.000001891791,0.000009409663,0.0003037633],"genre_scores_gemma":[0.9995719,0.0001127715,0.00007285655,0.00009644013,0.0000482406,0.00001794523,0.000003194167,4.090365e-7,0.0000762113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7190868,"threshold_uncertainty_score":0.1785214,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01956445274656378,"score_gpt":0.190224482788206,"score_spread":0.1706600300416422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}