{"id":"W2009928134","doi":"10.1016/j.bbaexp.2007.01.014","title":"In vivo footprinting analysis of the Glypican 3 (GPC3) promoter region in neuroblastoma cells","year":2007,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Neuroblastoma Research and Treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal; Université Laval; Hôpital Saint-François d'Assise; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Chromatin; Footprinting; Biology; Molecular biology; Transcription factor; Promoter; Pediatric cancer; Chromatin immunoprecipitation; Neuroblastoma; Histone; Glypican 3; Transcription (linguistics); DNA-binding protein; Gene; Cell culture; Gene expression; Cell biology; Genetics; Cancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003904112,0.0005071123,0.0004543907,0.0004328342,0.0005347321,0.0004449178,0.0005398708,0.0004212463,0.002473937],"category_scores_gemma":[0.0002276935,0.0004715572,0.001080491,0.0003167964,0.00064162,0.0002359474,0.0003250808,0.001816918,0.001092572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007739534,"about_ca_system_score_gemma":0.0007983415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006639961,"about_ca_topic_score_gemma":0.006774273,"domain_scores_codex":[0.9996742,0.00005539753,0.00001954281,0.000105379,0.00007150291,0.00007397098],"domain_scores_gemma":[0.9995998,0.0001653343,0.0000580001,0.00006224959,0.00004648579,0.00006811614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008373123,0.00001481528,0.00005065766,0.00002057754,0.000004090192,0.00002127787,0.00003067843,0.00005109272,0.9993069,0.00007897029,0.0000185355,0.0003186715],"study_design_scores_gemma":[0.00001817451,0.0000719923,0.001645059,0.000008093899,0.00001682744,0.00009854775,0.00005010788,0.0004265155,0.9958113,0.00007131301,0.001775789,0.000006208892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9528942,0.001676502,0.03876471,0.000425784,0.0001003227,0.0001002095,0.002545794,0.0003017141,0.003190691],"genre_scores_gemma":[0.9395179,0.001290846,0.04233143,0.0002257343,0.00003828862,0.0001476087,0.006112317,0.0002579244,0.01007805],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006639961,"threshold_uncertainty_score":0.01320261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00914940048932639,"score_gpt":0.2658650878962328,"score_spread":0.2567156874069064,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}