{"id":"W2010045259","doi":"10.1128/aem.02123-08","title":"Genomic Regions Conserved in Lineage II <i>Escherichia coli</i> O157:H7 Strains","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada; Canadian Food Inspection Agency","keywords":"Biology; Lineage (genetic); Genetics; Contig; Genome; GenBank; Escherichia coli; Genotyping; Primer (cosmetics); Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001791694,0.0002858085,0.0002192154,0.0004841819,0.0001753096,0.000336256,0.0001571814,0.0002499247,0.0006484421],"category_scores_gemma":[0.0003913639,0.0001760982,0.0002593745,0.0003968694,0.0002053469,0.000119278,0.0002499202,0.0002910266,0.0003292519],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001740622,"about_ca_system_score_gemma":0.0002656317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001298315,"about_ca_topic_score_gemma":0.00175199,"domain_scores_codex":[0.9997144,0.00003441601,0.00003237281,0.00008871433,0.00006552023,0.00006446532],"domain_scores_gemma":[0.999541,0.00008180623,0.0001953705,0.00004471016,0.00007339318,0.00006363814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001380802,0.00003092772,0.01542179,0.00004501821,0.000009954722,0.00008880514,0.0001584222,0.00006148062,0.9816447,0.00004761204,0.00004090398,0.002312174],"study_design_scores_gemma":[0.00002679318,0.000747535,0.655505,0.00005927315,0.00009945545,0.001908297,0.001019923,0.0008083339,0.33183,0.000127121,0.007845613,0.0000226705],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974878,0.0002500791,0.001094032,0.00001810607,0.000004800824,0.00002238741,0.0005274015,0.00001306287,0.0005824206],"genre_scores_gemma":[0.9911858,0.0002500301,0.003254365,0.0001769715,0.000008359321,0.00005436857,0.004070847,0.00002129839,0.0009779176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001298315,"threshold_uncertainty_score":0.002581477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007192269724679796,"score_gpt":0.2087060175129895,"score_spread":0.2015137477883097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}