{"id":"W2010616193","doi":"10.1093/molbev/msn075","title":"Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina","year":2008,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome Atlantic; Tula Foundation; Genome Canada","keywords":"Plastid; Biology; Dinoflagellate; Apicoplast; Gene; Lineage (genetic); Phylogenetics; Organelle; Genetics; Chloroplast; Evolutionary biology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005570567,0.0002643742,0.0001543872,0.0003047045,0.0001796962,0.0002710833,0.0001756539,0.0002453491,0.0006026751],"category_scores_gemma":[0.0001508719,0.0001848358,0.0002632065,0.0001849473,0.0001502294,0.000223524,0.0001973515,0.0003954975,0.0004642429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001687578,"about_ca_system_score_gemma":0.0001653891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006293944,"about_ca_topic_score_gemma":0.001252184,"domain_scores_codex":[0.9999607,0.00000240898,0.000004789823,0.00001566363,0.000008959626,0.000007576422],"domain_scores_gemma":[0.9997794,0.00004923853,0.00006530091,0.00002780102,0.0000368947,0.00004133043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005698198,0.000009195286,0.001446516,0.00002301198,0.00000257697,0.0001029898,0.0000622613,0.00004294324,0.9967422,0.00005506659,0.000009233098,0.001446967],"study_design_scores_gemma":[0.00005972854,0.000637542,0.4325509,0.00006936301,0.0001241588,0.002541207,0.0006161825,0.002895987,0.548533,0.0007158725,0.01121372,0.00004226607],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99793,0.0002375986,0.0009446003,0.00002932093,0.000004445676,0.000007222309,0.00050901,0.00003220495,0.0003056118],"genre_scores_gemma":[0.9844545,0.0005438823,0.005024707,0.00007908863,0.00001529371,0.00003246701,0.006567142,0.00005419373,0.003228739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006293944,"threshold_uncertainty_score":0.002016127,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007305238708059209,"score_gpt":0.2183728242671895,"score_spread":0.2110675855591303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}