{"id":"W2010658538","doi":"10.1016/j.vetmic.2015.03.019","title":"Genomic characterisation of the feline sarcoid-associated papillomavirus and proposed classification as Bos taurus papillomavirus type 14","year":2015,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Veterinary Oncology Research","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Bovine papillomavirus; Biology; Phylogenetic tree; Genome; CATS; Virology; Phylogenetics; DNA; genomic DNA; Sequence analysis; Papillomaviridae; Clade; Human papillomavirus; Whole genome sequencing; Genetics; Gene; Cancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006683092,0.0002421507,0.000522881,0.0001548936,0.0001186981,0.00001179607,0.0002463529,0.0003840371,0.00009417515],"category_scores_gemma":[0.0004289923,0.0001804131,0.00008381937,0.0002968422,0.0006027977,0.00008138076,0.0003191695,0.000363947,0.0001311756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002977049,"about_ca_system_score_gemma":0.0004390728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009855856,"about_ca_topic_score_gemma":0.000009464759,"domain_scores_codex":[0.9979047,0.0006113437,0.0005116396,0.0004487796,0.0001221733,0.0004014146],"domain_scores_gemma":[0.9985366,0.00008968649,0.0003210719,0.0005230968,0.0003724973,0.0001570503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002437658,0.0002751829,0.01560871,0.00005638561,0.0001054484,0.00009077645,0.0003966649,4.400544e-7,0.9781452,0.00002020609,0.0005842735,0.0022791],"study_design_scores_gemma":[0.01089693,0.03396099,0.7892926,0.0002331945,0.0002971558,0.0227168,0.000652516,0.0002771732,0.06793443,0.0002494085,0.07275915,0.0007296169],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958225,0.0005550546,0.000004872542,0.00156018,0.0005200357,0.0009999424,0.00005654353,0.00006425825,0.0004165469],"genre_scores_gemma":[0.9973585,0.0001934659,0.0003554245,0.0004506252,0.0001057467,0.00002123253,0.0002481902,0.0000397587,0.001227035],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9102107,"threshold_uncertainty_score":0.7357032,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1103020761489608,"score_gpt":0.3521127171592357,"score_spread":0.2418106410102749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}