{"id":"W2010664977","doi":"10.1093/molbev/msp193","title":"A Broadscale Phylogenetic Analysis of Group II Intron RNAs and Intron-Encoded Reverse Transcriptases","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Western Canada Research Grid; Idaho State University; National Science Foundation","keywords":"Biology; Intron; Phylogenetic tree; Group II intron; Genetics; Group I catalytic intron; Phylogenetics; RNA splicing; Ribozyme; RNA; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001934901,0.0001581641,0.0002700585,0.0001375543,0.0001053727,0.000005896509,0.00008751742,0.0002543871,0.00001079437],"category_scores_gemma":[0.00004580066,0.0001479252,0.0001168796,0.0001805552,0.0001512363,0.000004064343,0.00004136445,0.00005710992,4.262868e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008552697,"about_ca_system_score_gemma":0.00001477572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003341477,"about_ca_topic_score_gemma":0.00002786181,"domain_scores_codex":[0.9989914,0.000161246,0.0002144649,0.0003742934,0.00005580208,0.0002027965],"domain_scores_gemma":[0.9995742,0.00000728773,0.00008773487,0.0002257938,0.00003821048,0.0000667773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001558193,0.00005951318,0.001735594,0.000008929904,0.0002499149,0.000001368606,0.0000372488,0.00002199049,0.9873638,0.002968795,0.00004148914,0.007355518],"study_design_scores_gemma":[0.0009945986,0.002907629,0.04134861,0.00002331835,0.001033357,0.00002153088,0.00007863673,0.0004609885,0.9428097,0.006512512,0.00340998,0.0003991183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9039812,0.01009004,0.08543753,0.0002028441,0.00004272976,0.0001504824,0.00003131841,0.000008243749,0.00005559146],"genre_scores_gemma":[0.9968733,0.0008270959,0.00181777,0.0002141763,0.00003601018,0.00001162915,0.0001756654,0.000006756527,0.00003759739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09289207,"threshold_uncertainty_score":0.6032213,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004269936356558542,"score_gpt":0.2313760987945014,"score_spread":0.2271061624379428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}