{"id":"W2010664977","doi":"10.1093/molbev/msp193","title":"A Broadscale Phylogenetic Analysis of Group II Intron RNAs and Intron-Encoded Reverse Transcriptases","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Western Canada Research Grid; Idaho State University; National Science Foundation","keywords":"Biology; Intron; Phylogenetic tree; Group II intron; Genetics; Group I catalytic intron; Phylogenetics; RNA splicing; Ribozyme; RNA; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007134241,0.000363497,0.0003651997,0.001514557,0.0005015915,0.0004487487,0.0002033651,0.0003295779,0.0004366668],"category_scores_gemma":[0.001153468,0.0001287774,0.0003573365,0.001311198,0.0002130693,0.000437603,0.0006994482,0.0005622103,0.0002617744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001458713,"about_ca_system_score_gemma":0.0002049209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003328453,"about_ca_topic_score_gemma":0.0005736371,"domain_scores_codex":[0.9996642,0.00009888556,0.00001595147,0.000128524,0.00005064331,0.00004180897],"domain_scores_gemma":[0.9995146,0.0001635493,0.00008474965,0.00007869039,0.0000721789,0.00008622427],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003934607,0.0001683891,0.1091435,0.0002485186,0.0002466446,0.0006324786,0.0009426447,0.0103163,0.751936,0.003356622,0.000316076,0.1222995],"study_design_scores_gemma":[0.00004381131,0.001009422,0.838972,0.0001702445,0.000426665,0.001890999,0.001650415,0.08382209,0.04781257,0.006637552,0.0174757,0.0000884617],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795874,0.001264439,0.01704654,0.0000419587,0.000007829096,0.00002593629,0.0003069298,0.00005221023,0.001666712],"genre_scores_gemma":[0.9815332,0.000473441,0.01654653,0.00003434414,0.00001501648,0.00002177064,0.00110619,0.00001650292,0.0002529584],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001514557,"threshold_uncertainty_score":0.003772974,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004269936356558542,"score_gpt":0.2313760987945014,"score_spread":0.2271061624379428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}