{"id":"W2010868747","doi":"10.4161/self.1.1.9588","title":"Bacterial peptides are intensively present throughout the human proteome","year":2010,"lang":"en","type":"article","venue":"Self/Nonself","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dell'Università e della Ricerca","keywords":"Proteome; Human proteome project; Biology; Bacteria; Computational biology; Amino acid; Human proteins; Immune system; Peptide sequence; Pathogenicity; Bacterial protein; Proteomics; Microbiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002584612,0.0002378164,0.0002562377,0.0006924467,0.0002515698,0.0004237831,0.00008957217,0.0002446927,0.001724005],"category_scores_gemma":[0.0004164423,0.000125912,0.0001529568,0.001079633,0.0002154063,0.0003023357,0.0003538813,0.0001764861,0.0005342945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001085836,"about_ca_system_score_gemma":0.000130134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001981498,"about_ca_topic_score_gemma":0.0002156949,"domain_scores_codex":[0.9997366,0.00005584067,0.00001727672,0.00007493237,0.00008213191,0.0000332525],"domain_scores_gemma":[0.9996376,0.0001325257,0.0001189406,0.00002433508,0.00004462077,0.00004198166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0007632966,0.00004266707,0.04823557,0.0004946511,0.0002039271,0.001245117,0.0004428728,0.0003225129,0.8877856,0.0005734576,0.0006158745,0.05927441],"study_design_scores_gemma":[0.00003920956,0.0007679617,0.6763213,0.0001550514,0.0003113642,0.02046682,0.001159347,0.001008585,0.2456067,0.00325821,0.05085423,0.00005125067],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9815694,0.01314327,0.001653745,0.0001829577,0.00001499598,0.000007264672,0.0008309653,0.00004811724,0.002549271],"genre_scores_gemma":[0.9903293,0.004307555,0.002818669,0.0001172106,0.00002596276,0.00001029284,0.001138756,0.00001585293,0.00123636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001724005,"threshold_uncertainty_score":0.005767345,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01361756901710411,"score_gpt":0.2602081331878535,"score_spread":0.2465905641707493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}