{"id":"W2011004439","doi":"10.1139/g06-139","title":"Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.)","year":2007,"lang":"en","type":"article","venue":"Genome","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Oryza rufipogon; Genome; Japonica; Oryza sativa; Domestication; Polyphyly; Genetics; Oryza; Gene; Botany; Phylogenetic tree; Clade","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001505463,0.000146123,0.0001260003,0.0004049541,0.0001676297,0.0001851108,0.0001184497,0.0001289497,0.0005772936],"category_scores_gemma":[0.0002040087,0.000108952,0.0001887193,0.00032327,0.0001818878,0.0001254162,0.0002512869,0.0002031947,0.0001333018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002071226,"about_ca_system_score_gemma":0.0001321464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007625496,"about_ca_topic_score_gemma":0.001279197,"domain_scores_codex":[0.9999074,0.00001348203,0.000007680997,0.00003378933,0.00001627226,0.0000213655],"domain_scores_gemma":[0.9998128,0.00003133103,0.00008402221,0.00002152301,0.00001877489,0.00003155738],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003429557,0.00004248989,0.1141953,0.00003991583,0.00004381317,0.0001864491,0.0003763265,0.0001258072,0.8767354,0.0001589649,0.00004846024,0.007704081],"study_design_scores_gemma":[0.000010828,0.00009273309,0.9883757,0.000002761147,0.00003021495,0.0004931461,0.0001248006,0.0001793852,0.01024537,0.00006622299,0.0003738054,0.000005025664],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997082,0.00002725182,0.0001050773,0.000006201455,4.051384e-7,8.799461e-7,0.00005586673,0.000003951114,0.00009222205],"genre_scores_gemma":[0.9988623,0.00003820037,0.000497752,0.00001350353,0.00000180577,0.000004433909,0.0004167792,0.00000354256,0.0001617884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007625496,"threshold_uncertainty_score":0.00193125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008663552195677581,"score_gpt":0.2297814916846979,"score_spread":0.2211179394890204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}