{"id":"W2011237756","doi":"10.1104/pp.113.218347","title":"Gene Discovery of Modular Diterpene Metabolism in Nonmodel Systems  ","year":2013,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":164,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Novo Nordisk Fonden","keywords":"Diterpene; Biology; Computational biology; Secondary metabolism; Functional genomics; Gene; Bioproducts; Metabolomics; De novo transcriptome assembly; Transcriptome; Genomics; Biochemistry; Genome; Ecology; Biosynthesis; Bioinformatics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008313535,0.0001722539,0.0003178756,0.00004355194,0.00002082418,0.00001235454,0.0002437688,0.0002056027,0.00001272394],"category_scores_gemma":[0.00003043711,0.0001415454,0.00007841463,0.00005928301,0.0000736243,0.00001048174,0.0001078107,0.00007306521,0.00001497115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005898693,"about_ca_system_score_gemma":0.00002968602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002363035,"about_ca_topic_score_gemma":0.000007980728,"domain_scores_codex":[0.9989508,0.00006948131,0.000278684,0.0003513975,0.00007725199,0.0002724255],"domain_scores_gemma":[0.9994584,0.00002532786,0.0001126645,0.0003247648,0.00003397113,0.00004482635],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009175653,0.00009229162,0.0002587829,0.00004705421,0.00005031787,0.000002816863,0.000008999549,0.0004981307,0.9984138,0.00004947751,0.0004180612,0.00006851706],"study_design_scores_gemma":[0.0002734377,0.00004678547,0.01299543,0.00002186878,0.00001281183,0.00003017355,0.00002368458,0.001344011,0.9843064,0.00008131117,0.0006776405,0.000186441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979625,0.0009251318,0.0000992287,0.00003127547,0.0001440441,0.0001691629,0.0004474065,0.000006253992,0.0002149923],"genre_scores_gemma":[0.9981595,0.00030681,0.0001230773,0.00006522233,0.0001968005,0.00004895152,0.0008645316,0.00001121972,0.0002239272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01410739,"threshold_uncertainty_score":0.5772053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007375984219203286,"score_gpt":0.1906175301084337,"score_spread":0.1832415458892304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}