{"id":"W2011237756","doi":"10.1104/pp.113.218347","title":"Gene Discovery of Modular Diterpene Metabolism in Nonmodel Systems  ","year":2013,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":164,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Novo Nordisk Fonden","keywords":"Diterpene; Biology; Computational biology; Secondary metabolism; Functional genomics; Gene; Bioproducts; Metabolomics; De novo transcriptome assembly; Transcriptome; Genomics; Biochemistry; Genome; Ecology; Biosynthesis; Bioinformatics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005189993,0.0005492857,0.0008009257,0.000854868,0.0003354809,0.0007574192,0.0004725008,0.0005062678,0.0009660927],"category_scores_gemma":[0.0006362615,0.0002748079,0.0009138262,0.0009876686,0.00030323,0.000509415,0.0006568632,0.0007443474,0.0006165389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000889303,"about_ca_system_score_gemma":0.0006806276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009990751,"about_ca_topic_score_gemma":0.002671682,"domain_scores_codex":[0.9996454,0.00003920431,0.00002830864,0.0001380048,0.00009743116,0.00005158143],"domain_scores_gemma":[0.999629,0.0001335352,0.00005436422,0.000056202,0.00006983334,0.00005708411],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005618322,0.00002165784,0.0006065709,0.000106622,0.00001208351,0.00006493991,0.00003187178,0.0004175529,0.9941935,0.0003105523,0.00007728828,0.004101136],"study_design_scores_gemma":[0.00004596548,0.0005760733,0.01490291,0.00003512904,0.0001296406,0.0005035111,0.0001479681,0.0115202,0.9526061,0.001137568,0.0183597,0.00003514838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8792,0.002863164,0.1016371,0.0004236811,0.0001014357,0.0003817377,0.00908331,0.001351036,0.004958572],"genre_scores_gemma":[0.7941925,0.003949523,0.1566608,0.0004118387,0.00004463593,0.0004891363,0.03880765,0.0006064951,0.004837518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009990751,"threshold_uncertainty_score":0.006452382,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007375984219203286,"score_gpt":0.1906175301084337,"score_spread":0.1832415458892304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}