{"id":"W2011724467","doi":"10.1111/j.1462-2920.2009.01987.x","title":"Diversity and evolution of <i>repABC</i> type plasmids in <i>Rhodobacterales</i>","year":2009,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Plasmid; Roseobacter; Genetics; Operon; Replicon; Gene; Phylogenetic tree; Betaproteobacteria; Clade; Genome; CRISPR; Computational biology; Evolutionary biology; 16S ribosomal RNA; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005149265,0.00008311097,0.0001130295,0.00002226122,0.00008195368,7.638472e-7,0.00006732951,0.00008289204,0.000006326403],"category_scores_gemma":[0.000004074383,0.00008441469,0.00002446143,0.00002212934,0.0001216709,6.003727e-7,0.0004181736,0.00003690524,0.000002197452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002069587,"about_ca_system_score_gemma":0.000004977272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001987973,"about_ca_topic_score_gemma":0.00001910233,"domain_scores_codex":[0.9995363,0.0000297997,0.000107225,0.0001914929,0.00001406495,0.0001211362],"domain_scores_gemma":[0.9998336,0.000004812546,0.00003834799,0.0001005967,0.000002608483,0.00001996919],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005058145,0.00003848741,0.2554501,0.000001417566,0.000009098479,5.347239e-7,0.00007113306,0.000009756337,0.7441278,0.00001549436,0.00005126783,0.0001743176],"study_design_scores_gemma":[0.0004909469,0.0005248561,0.8360753,0.000003225453,0.000008408072,0.00002177933,0.00005921958,0.000001941398,0.1590134,0.0001227122,0.003562117,0.0001160393],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979561,0.001698477,0.000007309171,0.0000373184,0.00005854598,0.00007124928,0.00002655212,9.00258e-7,0.0001435384],"genre_scores_gemma":[0.9990214,0.0005610216,0.0001482856,0.0001509905,0.00002106043,6.431158e-7,0.00002858656,0.000003293579,0.00006476857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5851144,"threshold_uncertainty_score":0.3442331,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004289965011348473,"score_gpt":0.1723666741785012,"score_spread":0.1680767091671527,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}